GgaINT1002771 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NW73]
Coordinates
chr18:8193082-8193666:-
Coord C1 exon
chr18:8193539-8193666
Coord A exon
chr18:8193220-8193538
Coord C2 exon
chr18:8193082-8193219
Length
319 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TGGTTTCTTGCTCTCTGAAGAGC
3' ss Score
5.41
Exon sequences
Seq C1 exon
GCTCAGGCATTGAGGACTTCATCCACGCTCTTGAGAGCCAAGATCTCGCAGTGGAAATTACAAGCAAGGAAAATATCACAGAGGAGCTGAAATACAATGGGGCCATTAAAGTATCTCGTGAAGGCCAG
Seq A exon
GTAAGGACTTTTGCTCCCATCCTATCATTTCTTCCTAACAGTGCACTAATTAAGCAAGGTTCCTCCTTCAGCTGTACTGAACATGTATTGGATCAAGCCCCCACAGATAAAGATTAGTGAGTGTTTTAGCCAGTAACCTATGTGCTAGAGGAGACCTTATGATTCCGTTCCTCCACTTGGATGACCTTTGAGGTCCCTCCCAAGCCAAGCCATTCTATGATTCTATTTGTGTTGCACAAAAGGCATAAGTGACATGTATTATTTTAGGCCTGAATTCTCCTGGCCAAGAGTTTTCATCCTGGTTTCTTGCTCTCTGAAG
Seq C2 exon
AGCTACAGGTTTACCATCTTTTGCCACATGGAGGCCATCAACTGCTTCCCAGTGCTTGTGAACATCATCAGCAATGCTCTGCTGAGACCTTTCAGTTCCACCGCACACATCCAGGTCTGGAGCCATCCTTTTACCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021399:ENSGALT00000006909:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(11.8=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(12.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGCATTGAGGACTTCATC
R:
AGAGGTAAAAGGATGGCTCCAGA
Band lengths:
264-583
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]