RnoINT0010436 @ rn6
Intron Retention
Gene
ENSRNOG00000004147 | Abca8a
Description
ATP-binding cassette, subfamily A (ABC1), member 8a [Source:RGD Symbol;Acc:1307333]
Coordinates
chr10:98367115-98370188:-
Coord C1 exon
chr10:98370023-98370188
Coord A exon
chr10:98367174-98370022
Coord C2 exon
chr10:98367115-98367173
Length
2849 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TCTCTTGCTCTCTTTCTCAGAAT
3' ss Score
10.85
Exon sequences
Seq C1 exon
GTGAATATGGACGTCGACACCCACCTTTGTTTTTCTTGAAGTCCTCATTTTGGACAGGACAAAATCCAGCAGATCGGACTGTCCTTGACAATGAAAGGGACTATGAGTTTCCTGATGACTCTTTTGAACCTGTGTCTACAGACTTCCATGGGAAGGAAGTCATCAG
Seq A exon
GTGAGATCAGACGTAGTGTGGATGAAGTTGGACTGTAAGGCCGTGCTATCCTCAGCCTAAAGCTTGCTCCAGACATGTAGCTCACCCCTGCAGACCCTCTATTGAGTCCTTCACAGGCCTCTGACCTGATCTCACTTACGTTGCCTGTCATTCTCTGTCCATTATTCTTTTAAAAACTCTAGCCTGCTGCTGTTAGTGCCAAACCTAAGGCAATAGAAGCCACAACTCAGCAAAAGTCCTCTCTGCCTGTCCCTTGCTGCTTCTATTCTCTCTTCCTTCCCTTCTTGTCTTTTTCTTCAGCTCACGGCTTCACACCATCCATTTTCCTTCGCTCATCTGAACATTCCTTTCTTTATGGATCCATCTTTCCTACAAAGAAGACCAAGGAAAAGGGGACGAGGAAAGTGAAAGCATGGAGAAGAACAGGAAATCAGATCAACGTGCCTGTAGGTCATGCACACCTGCATTCTGGGTTATAATAAAACAGGTGTTTCATGTGGTACAGGTGGCATTTTGTTCAAATAAAGAAGAAATTATATTATATCCCATCGAGGCCAATTAATTCTGCCTACTTGCATTGGTATAGTGTGAGGCTGCCCACTGGTGGCCTATCACCTCCAAGGAGAAGTGACTCCCTCTTAGCAACTACAACTACCAATGACTCCTCAAGTAGGAGTGTCTCTCATGAATCCATCCTCCAATTATTGTAGAGTCCTTACTTGCTCGATCTTGCACAGATAGTCACAGCTCTGTAGGTTCGTTAGTGACAGCCATGTCACGAGCAGGAATAGAACTTCACAGCACCTCTCTCTGTCTTTCACCTTTCATGTTCTTTCCATCTCCTGCTCTCCTGTGTTCCCTGAGCCTGGCAGGTGAAAGCGTTGGTATTTTCCAGTTTCTAATCATAAGTTTCAATTTTTAACATGAAGCCTGCCCCATCGATATCCTTCTCACTTTTCTTTTGGATAATTTTTAACCTCAGGCAGAGAAAGTCCTATTGAGACACTGTTTTTGTCTACTAGTCTCTCTCATCTTCTCTCTGATATCTCACTGAATGAGAAGTGAGGGGAAAGAATAGGGTGTTAGTGTTTAAATGGAAGTGAGAACCTAATTTTTCTTTCTTTTCATTTAAAGTATTTTTATTTTCATGCTTTATGTTTTGGTTATTTTCTTTCCCTTCCCCAACTCTTCCTACATCCTGCCCTACCCACCTAACTTCATGTTCCATGTCCTTTGCCTTTCTCAGCCCTCCCATCACCAAACCAAACCAACCAAACAAAAACAATGCCAAAACAAAACAAAATAAAACAACCCCCTGCCCCAAAAGAACCCACTGAGTTCATTAATGTTGACCTGTCCTAGAGTATGGTTGAGATACTCAGTTTCACTCCATGGGAGAAAAAGAATTGTCCCTCTCCTAGCAGGTATCAGGTACAAATAGCTTCTTGGTTAGAATGGGATCCCATGTCCACTTCTCCATGCTGGAGTTTTGTCTGGTTTGAACCTGTGCAGGGCTTGGCCATTCTGTCCCACTCTCTGGGAATTCATGTGTTCATCTGCTCTGTTGTGTCTAGAACAGTGGTTCTCAACCTTCCTAATCCTGTGACCCTTTAATATAGTTCTTCATGTTGTGGTGGCCCACAACCATAAAATTATTTTGTTGTTACTTCATAACTGTAATTTTACTACTGTTATGAATTATAATGTAAATATCTGATATGCAGGATATCTCATGTGTGACTCCAAAGGGGTCATGAACACAAGTTGAGATCTGAGGGTGTAGAAGACTCTGTTTCCTTGGCCTTATCACCATTTCTGCCTCTTACAGTCTTGTCGCATCCTCTTCCTCATAGGTTCCAAAGCCTTGCTTGAGGGGAGAAGTTTGATAAAGCCAACCCCTTTACGGTTGAGTAATCCAAAGTTTCTTACTGTGCACAGTGCCTACTTGTCTCAGTGTTAATTATCATCTACTGAAAAAAAGCTGTGGGAAACCTATTTTAACCAATATACATAAACTCTGAGTTGTTTTAGAAGAGTCAGTTGGGTGCAAAAACACTAAATGTATATTTAGCTGACAGAACACAACCAGACAGATCACATGGCTACATTTCCAGAGCTAACGTGATTTTAAATGGCAATATATAGAATTTAGTGTCCAACAGTACTAAAAATTTATTAATATTTACAGGNNNACCCTCTTAGTGATCATAATCTTCCTCATATAATGACTAGCATCTGATACTTTTCATGGACCACTTCTTCAACATGCAACACGAAACATATATACTGTTAGTAGTTCTTCTTTCAGCACAAGAAAGCAGAGCTCTAATAAATAGCTATACTTATTGACTGTTTAATGGTTAGAGTCCAGGGATGGCTAGCACTTCTGATACTGTTCACGGGATTTCCTCTTCTTGCCATTCTATACTGCCTGGCTGACTTGAAGAGATTCTGAACCTTGTGCAGATGTTTTCTCTAACATTTGTAAAAATGTATGCTCCCTACTCAGCCGTGCTATGGTAGCTGTCTGGGTTGTATCATTGTCTAGTTTCCCCATCACTACATTTGGTTTAGATGAGGAAAAATGCTCACAGTGGCTCGAACAGTGTCCAAGCCTTGGCCCACACCAAAGGAAGCAGCCTGTCTTCCAGGTGAGCTCAGGTACTGGTCAGTTTTTAAAACACTGACCCAAGTACCATTGCTGTCTAACCATAGCTAAGTCAAGTTCACATGCTCTCTCTCATGTCCTTGCCATCCAAATTCACCTAAAGATTCCAGCCAGACTCGGAGTTAGATAATAAAGAAAACCATTGCTCTTTAAACCATGTTTCTCTTGCTCTCTTTCTCAG
Seq C2 exon
AATCAGAAATCTTACAAAAGAATACATACAGAGGTCTAAGCGCACAGAAGCTTTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004147:ENSRNOT00000005665:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000522=ABC_tran=PU(1.4=9.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]