RnoINT0010441 @ rn6
Intron Retention
Gene
ENSRNOG00000004147 | Abca8a
Description
ATP-binding cassette, subfamily A (ABC1), member 8a [Source:RGD Symbol;Acc:1307333]
Coordinates
chr10:98364235-98364971:-
Coord C1 exon
chr10:98364833-98364971
Coord A exon
chr10:98364326-98364832
Coord C2 exon
chr10:98364235-98364325
Length
507 bp
Sequences
Splice sites
5' ss Seq
CTGGTAATT
5' ss Score
5.99
3' ss Seq
CACTGCTTCTTCCTTTTCAGATA
3' ss Score
11.64
Exon sequences
Seq C1 exon
ATTTTCCTCCTGGATGAGCCCACTGCTGGGCTGGATCCCTTTTCAAGGCACCGGGTGTGGAATCTCTTGAAGGAGCGCAAAGCAGACCGCGTGGTCCTCTTCAGCACACAGTTCATGGATGAAGCTGACATCCTGGCTG
Seq A exon
GTAATTGCTGGCTTCCTTAAGCATCACGATGAGGACTTAGGTCTGAAAATCTTAAACTATTTTCTTTGCTGCCGCTTTTGTACTGTTAGATGCTATGAGCCATAACCAGGAGCTCTTTTAGGCAAAGGTTTGAGGTGTCTTTATCCCTTCATGTTTACAGCATCATGGTGACACAATGTCCTCTTTAGCTCACTAACTGCAAGATAAATGCCATTGCGTTGAACTCCATGACTGAATAAATCAACCTGACAGATCTGTGCACAACCAGCTGGAATACATGTGAATGCTTACGCTTATCAAAAATGCTCATGTAACTCATTCTGTGGAGGTGTCTGACACATGAATAATTTACATGATCATCAAAGATTATGTTGGGTTTTTTTTTTTTTGAGCCATGATTGCATCCAACAGCAGTATTTAAAGTTTTATGAACTCTTAGGCAATTCATTGTATCTCATATTTCTCTAAAATAAAACATATCTCCCATCACTGCTTCTTCCTTTTCAG
Seq C2 exon
ATAGGAAAGTGTTCATCTCCCAGGGGAAGCTGAGGTGTGCAGGATCTTCCTTGTTTCTGAAGAAAAAATGGGGGATTGGTTATCACTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004147:ENSRNOT00000005665:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(5.5=17.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTTCCTCCTGGATGAGCCC
R:
CTTAAGTGATAACCAATCCCCCA
Band lengths:
230-737
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]