BtaINT0010844 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006937 | ABCA10
Description
ATP-binding cassette, sub-family A (ABC1), member 10 [Source:HGNC Symbol;Acc:HGNC:30]
Coordinates
chr19:61974624-61976747:+
Coord C1 exon
chr19:61974624-61974762
Coord A exon
chr19:61974763-61976656
Coord C2 exon
chr19:61976657-61976747
Length
1894 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CTTTCTCTCTTTCTACTCAGATA
3' ss Score
11.04
Exon sequences
Seq C1 exon
GTTTTGCTCCTGGACGAGCCAACTGCTGGACTGGATCCTTTCTCAAGGCACCTCGTGTGGAACTTCCTGAAGGAGCGGAAAACTAACCACACGATCCTTTTTAGTACGCAGTTCATGGACGAGGCTGACATCCTGGCTG
Seq A exon
GTGAGTCTTGGGTTCTTTATACTGACTCGGTATTCAAGGGCTGAATACGAGAGAGATTCTCTCTAACGTCTGTTGGAAAGAAGAGAGTCTCATTTGCCGTGCATCTGAGAAAGGGCATCTGAAAGTGGCACTTGGCGTCCAGGCATTCTGACCCCTGTGAGTTCTCAGACTCACGCTTTATGTATCCTCCTGTCTGTAACTTTCTGGGCTGTTTATATTAATCACAAGTGCATATTTTTAAAAATTTGAAATGCCAGTGTTACTTTTTATGTGTGTGTGTGCATGCTAAGTCGGTTCAGTCGTGTCCGACTCTTTGCAGCCCCATGAACTGTAGCCCGCCAGGCTCCTCTCTCCATGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCACGCCCTCCTCCAGGGGATTTCCCTGACCCAGGGATCAAATCCACATCTCCTGTACTGGCGGGCAGGTTCTTTACTACTAGCACCACCTGGGAAGCTGTATTGTGTATGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATACAAAAATATGTGGCTTCCCACTGAAGTGACTTAGCACATGCACATACAAAAATATATATTTTTTGTTGAGTAGAAAGGAATGTTTAGCTGGGAAAAACTCTATTTTAAATTTGCAGTCCTTTGTGCCCTTCTAGGGAGATCCTTTCTTTACTGAATGAGGTGTCGGGTGTGAAGTTTGGAGAATTAGAGAGACAGCAAACATTTTGCCTCGGAAATCTTGGCAGGTGGGGAGGACGGTTTCAGTGAGGCCAGAGATCATGTAGAGAAGGAATCTGGGGAAAATGAGGTCAGAACGGGTCTCAGGGAAGGGAGAGAAATTTTTGCTGCTGATGTGCCTTGTAAGAGTATCCGAAGTTTCCCACATGAAATCAAGGTTGGATGCACTTTATCTCTTGTGTCAATTGTCTCCTGCCTCAAAACTGCTGTCACAAGCCATCTTGAAGCTCGGTGCCCTAAATCAATAGGCATTCACTTGGCCTGTGTGTTGCAGAGTTGGCAGTTCAGCTGGTAGTTGAATGGCCATTGGCTTTCGCTGTTGTTGCCACTTAGTCGTGCCCAACTGTTTGCGACCCCATGGCCTGCAGCACACCCGGCTTCCATCCTCCGCTATCTCCTGGAGTTTGCTCATATTCATGTCCATTGAGTCAGTGATGCCATCCAACCATCTCATCCTCTGTCGTCCCCTTCTCCTTCTGCCCTCAATCTTTCCCAGCATCAGAGTCTTTTCCAATGGGGGGGCTCTTTGCATCAGGTGGCCAAAGTTTTGGAGTTTCATCTTCAGTATCAGTCCTTTTAGTGAGTATTTAGGGTGGATTTCCTTTGCGAGGGTGACTTAGGTAACTCAGCCCCCTGAAGGTGTATTACGTCTTCTAGGAGGCATGGTCCTGCTCCCCCTGAAGGTGTATTACGTCTTCCAGGAGGCATGGTCCTGCTCCCCCTGAAGGTGTATTACGTCTTCCAGGAGGCATGGTCCTGCTCCCCCTGAAGGTGTATTACGTCTTCTAGGAGGCATGGTCCTGCTCCCCCTGAAGGTGTATTACATCTTCTAGGAGGCATGGTCCTGCTCCCCCTGAAGGTGTATTACATCTTCTAGGAGGCATGGTCCAAGCAGGTTCTCGTGGTGTTGATTGAGCCTTGAAAGTGCAAGACCCAATGCATCAGCCCATCTCAAGCCTCTGTGTGCCCAGGTCAGCACTGTCAGTCCCAGGGTAGAGACTGGTGTCAAGTAGCAGCATCTAGGAACCCTAGTTACCGAGGTTGCATTCATCCTGAAAAATCCAGCCAGTTTTGGTCTCCAGAAAGAATGTTCTATACAAGCAGTTTACAAAATTTACTCTTTCTCTCTTTCTACTCAG
Seq C2 exon
ATAGGAAAGTGTTTCTGTCTAACGGGAAACTCAGATGCGCAGGGTCGTCTCTGTTCCTGAAGCGGAAATGGGGTATTGGATATCACTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006937:ENSBTAT00000040376:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(5.5=17.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTCTCAAGGCACCTCGTG
R:
AGTGATATCCAATACCCCATTTCCG
Band lengths:
190-2084
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development