RnoINT0011110 @ rn6
Intron Retention
Gene
ENSRNOG00000007041 | Abcg2
Description
ATP binding cassette subfamily G member 2 [Source:RGD Symbol;Acc:631345]
Coordinates
chr4:88862846-88864611:+
Coord C1 exon
chr4:88862846-88862998
Coord A exon
chr4:88862999-88864453
Coord C2 exon
chr4:88864454-88864611
Length
1455 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGA
5' ss Score
9.11
3' ss Seq
AAAGATGGCACTTGCTTTAGGTT
3' ss Score
4.21
Exon sequences
Seq C1 exon
GATGACGTTGTGATGGGCACCCTGACAGTGAGAGAAAACTTACAGTTCTCAGCAGCTCTTCGCCTTCCAAAAGCTATGAAGACGCATGAAAAAAATGAACGGATTAACACGATCATTAAAGAGTTAGGCCTGGACAAAGTAGCAGATTCCAAG
Seq A exon
GTATGAAAACCCCTCATATTATTATAGCCAGGAAATTGCCCTGGGGAAGGAATATAACGTTAATTAAAAGTTTTCTATGATTCTAAATGACTAAAAGCAACCAGTGTACTAGATGATGAGAAAGTAACTGGCTCTATAACATAAGATGAAGAAACAGAGAAACAAAAATGAATAATGGTGGATCAGCAGGGAAACACATTCTTCATCTGGCTTTTTCCATATGCTCTTCCATACCCTCACTGTCTAGTCAGAGCTTGGCACTAAGTACTCTGCTGCTTGTTGAGGAGTAGTTGTGACAGGAGAAAGACAAGAATCCAAAGGTTCTTGCTCTGTATACAACATTTTGCTGTGATTAAGCATCCAAGTTTCTATTTGGTCACATTAGGACTTACAGTTTGTTACTTTTCTGTAGTCTTTCCTTGATCATTGCGTTTCTCTTCCTTTCCTTCTACCTCTCCTTTCTTCCTTACCTACTGTCAGCATTTGTCAGACTCCTACATGCCAGACTGTGTTAGTAACAGAGTAACAAAGAGTAAGAAGGTGCTTCTCCTTTGGAATGTGAATTAGGTCAAGAAGAGGAATTGAGGCAGTGGGTGAGCTTTTTAAATCACCAGTCTGTCTAGTTTTGGCTGAGCAGACATTTGGGCATCAGTGAAAATACAATGACTGTAGTTTAACCCTCCTGCCTATGGTTATTTAATTCCTTAGAGGCCATGGGTAGTGATGATTGTGAGGAATTGTTGCGTTTCTTGGTACTTGCTAGCAGTCATTCATGTACTGTTATTTTGTTGGGAAAAATATACTTGCATCAACTCAAAAACTGAAAAGCACTTAAAATGGCGTGGTAGAATGGGAACTCTCTGTTTCCCCCACTCCCACCCCCCAGTGTCAGTCCACTTAGGGACCACTGGGCAGATAGCAAGTGTTAGGTGCTGGACTGTAATAAACTATGCCCACTGTGCTTCCCTTTCCTCTGTCTTACCTGTGTCTCAGTTGGTAAAAAGCACAAGGACCTGACTTCAGTCCCTAGTACCCGTGTAAAGCCAGCCTCCTGTGGTGGTGCTCACATGTAATCTTTGCCCTGGGAAGGCTGAGACAGGTGGATTCCTGAAGCCTAGCTGACTTGATGACAGACAAAATAAATTGGATGGCTTCTGAGGGATAACAAACTCTTCAAAGCACGGACCTCACTTGAGGTCAGGCCGCCTTGCAGCTCTAACCAGAGCCTCAGTTTACTCATCTGATAAAAAAGAAACTACCTCCCCCCAGGTATTTTGCTCTTGATAGACCAGTGGTCTTCACAGTGAACACAGCAAAGCGTCTCCACAAGAGGCAGGTGGTGGGTGTGTGCTTACAAGAGACATGCGGAGACAATCAGGGCTGCACCATTTGGTCTGTCTACCAAAAGATGGCAACCACGTTCACTCTTGTTGACAAAGATGGCACTTGCTTTAG
Seq C2 exon
GTTGGAACTCAGTTTACCCGTGGTATCTCTGGAGGAGAAAGAAAAAGGACAAGCATAGGAATGGAGCTCATCACTGACCCTTCCATCCTCTTCCTGGATGAGCCCACAACTGGTTTGGACTCAAGCACAGCAAATGCTGTCCTTTTGCTCCTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007041:ENSRNOT00000009546:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.057
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(33.1=100)
A:
NA
C2:
PF0000522=ABC_tran=PD(23.8=67.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGACGTTGTGATGGGCA
R:
TTTTCAGGAGCAAAAGGACAGCA
Band lengths:
310-1765
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]