RnoINT0011135 @ rn6
Intron Retention
Gene
ENSRNOG00000039890 | Abcg3l3
Description
ATP-binding cassette, subfamily G (WHITE), member 3-like 3 [Source:RGD Symbol;Acc:1564709]
Coordinates
chr14:6075926-6081445:+
Coord C1 exon
chr14:6075926-6076062
Coord A exon
chr14:6076063-6081293
Coord C2 exon
chr14:6081294-6081445
Length
5231 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGT
5' ss Score
10.75
3' ss Seq
TGTTTCCTCTCTGAACTCAGGAT
3' ss Score
7.9
Exon sequences
Seq C1 exon
CCTAGATCCAAGGAACTCAGGAAAAGGACCAGTATAGCAGTGGAGCTGGTCACTGAGCATCCCATTTTGTTCTTGGATGATCCCACCACTGGCTTAGACTTGAGAACTACAACTGATATCATTGCAGTCCTGAGAAG
Seq A exon
GTACGTGCTAAAGGGGCATTAAGGTTTTATAATGCCTGGTTGCTTGTGGGCATTTTCAGTGCAGGAGATTCAGAAGTAGGCAACAGAACTCTTGTTTATTAGAGGGAAACTTCAAAGAACAGAAAGAGGCATCAAGAACACAGTCTAGAGCATATGGCGGGTGGCTGTGGAGAAGCTGGAGCACTGCTTTAAATAGCATGTCCCTAAACCCTCAAGCGTGTGACAAGTGAGCCGGGGTCATGGAGAGATCTGAACAGAGTGACAGCTGCGGAGAAAACAGGATTCTAAGGTCTGGTTTCTGAACCCAGAGAAGAAAGAAGTAAAAGAAATGACATTTCCTGCTCTCAGGAAAGAGGTCTGTGGCTGAAGAATTTGTAGGAAAAAGTCTAAGAGTTAGGTTTTGTCCATGGTAAAAATCATGAAGAGCTTCAAATTGACTGAATACCTCCACGATCCATATAAGGACCATCCACTCTGCTGACCAGGCTACTCCCTGTTGCCCCTTACTACTCTCTGTCTTTCCTTTCTTCCCCCTGTTCTGTCATCATCCTCCATCATCCTAACACCCCAGCGTGTAACTCCATGAACCGAGAGCACTCCCCATTGTGCTGTCCGTGTGAGGGGGGTCAACAAGCAGGGCCTCACCACTTCCTGGTCTGTGGACTCCTTGGGTGTCCCCCTGCCTGTGTGTCCCCTTTACTGTCTGCTTCAGGATACTCTCTAAGATCAGGTTCTTGCTTCCAGATCAAGATCTTGTTTCCAGTATGGAACATTTCCCTCTGTGCATTTCTCATGCCGTTTGTAGTCTTAGTTCATTGTCTGGGGCCATCCTAAGTGTGGTTTATCCCAGTGTTCTGGGAGCAGACTCAGGCCCTGACATGCTGTGTCCTTCCTGGTTTCCAACACTCCTAGAACTGCATCCTACTGGTAGAATTTTTTTATATTTATTTAGTTATTTAATTTGTGTGTGTGCATGCGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTCTTTGTGCAACATGAATGTAGAAAGGACAACTGAAGAGGTTGGTTTTGTGCTTTTACCAAGTGGCTTCCAGAAACTGATCCAGGGTCTTTATTCTCATCAGTGAGCACCTTTATCCATTGAGCCATCTCTCTTGCTTATAAGAATCTTGATCATCTAATCATGCTTTTAGTTGCTGGGTTCTATGGAATTACAGGGTTTTGTTTCTTCTGTGATTAATAGTCTATCAGGGATAAAGTCACTTATGGCATCAGTCTACTCTTTGTCTTGTCTCTACTGTCCAGTTTTCCTGCTGGAATTCAAGGTGGACACTAAAATGCCCAGCTCTCTCCCTCTCGTCTTTTCTTTCCCTCCCTCCAACCTTCCCTTCTTCTCTACTAGCCTGCCTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTTCTTTCTTTTCTTCCTTCCTTCCCTTCCTTCCTTCCTTCCTTCCTTATATCTTGTTCTGTTTTTGTCTTTTTAAAACACAGTCTTATGCAATCTAGGTCATCTTAGATCTCCTAATCCTTTAAAGTGTTACATTATACAGACATGACACCAGACCCAGCTTTTATAAAAATATTTTAATGGCAGTTTTTCATTTGTGTGTTTGTTTTTCAAAACAGGGTTTGTTGGTTTAACAGCCCTGGCTATCCTGGAATTAGTTCTATAGACCAAGCCGGCCTCAAGCTCACAGAGGTCTGCCTGCCTGTACCTCCTGGGTGATGGGATTAAAACTGTGGGTCACCACCACCCACCTTTGGTGGCAGTTTGAAACACTGTTTTTGGCTACTGGTTTCCAGCTGACTCTCTAAAATGGTAGTCATGCAATTAAACCCACAGTCTTGGCTTCGCCCCTTACTAACTTGACCCCTTCACCTGTTGATTGACCTTTTAATGATCATCTTCAGAAAAGGGGAGATTATATTACGACTTCCTTATGTCAATATTATTAAAATTGAAATGAGGTCATCGCTGAAGCATTTAACAGTGATATCAAGTGGTTAGTAATGGGAATCACATTATCAGAACAAACAAAACCAATTCCTGAAGAGGCAGAAACTGTCAAAAGGAATTGTGCGATACAATCATACTCTTAATACCTGCTCTGTCATTGGTTCTCAATCTTGTGTGAACCTCAAGATTAGCCAGCATGCCTGTTAGTGATCAGTTCACTCTGAGGTCTACACTGCCTAGGGATCTACATTGTTGATAAAACTCTGGTGTACTGTGGACAACTGATGTTCCACATGTTAACAAGTTCTAGACTTCTTTTAAATTATATTTTGTTTTTTTTTCTTTTTCATTTTAATTGGTTATTATTTATAATTTAAATATTGTCCCTCTTCCCGGTTTCCCCTCCAAATCCCCTATCCCAAACCCCTCCCCCTGATTCTATAAGGGTGCTCCCTCACCCACCCACCTACTCCCCCCTCACTGTCTTAACATCCACCTATGCTCGAGCATAGAAACTCCACCGGATCAAGGGCCTCCCTCTCCCATTGATACAAGGCTTGTTTTGGGTCCAAGTATGTGGTCAACTTTGGAGAAGGTATCATGAGGTGCTGAGAAGAAGGTATATTCTTCTGTTTTAGGGTGAAATGTTCTATCTGTTAAATGCTCTATCTCTTAAATCCACTTGGTTCATAACTTCTGTTAGTTTAACTGTGTCTCTGTTTATTTTCTGTTTCCATGATCTGTCCATTGGTGAGAGAGGGTGGTAAAGTCTCTCAATATTATTGTTTGAGGTTCAGTGTATATTTGGAGTAACTTTTTTTCAATTGTGGGTACCTTTGCATTTGGAGCATAGATGTTCAGAATTGAGAGTTCATCTTGGTGGATTTTCCTTTGATGAGTGTGAACTGTCCTTCCTTGTCTTTTTTGATAACTTTTGGTTGAAAGTCCATTTTATTCACTATTAGAATGGCTATTCCAGCTTGTTTCCTGGGACCATTTGCTTGCAAACTTTTTCCAGGCTTTTCCTCTGAGGTAGTGTCTGTCTTTGTCACTGAGGTGTATTTCTGCTATGCAGCAAAATGCTGGGTCCTGTTTACATATCCCGTCTGTTAGTCATGTTTTTTATTGGAGAATTGAGTCCATTTATTTTAAGAGATATTAAGAACCCGTGATTGTTGTTTCCTGTTATTTTTGTTGTTAGAGGTAGAATTATGTGTGGTTCTCTTCTTTTTGGTTTGTTGTGGGAAGATTAATTTCTTCCTTTTTCTTGGGTGTAGTTTCCCTCCTTGTGCTGGAGTTTTCCATTATCCTTTGTAGGGCTGGATTGGTGGAAAGATATTGTGTAAATTTGGTTTGTCATGGAACATCTTGGTTTCTCCATCTATGGCAATTGAGAGTTTTGCTGGGTATAGCAGCCCGGGCTGGCATTGTTTTTTTCTTAGCATCTGTGTGACATCTTTTCAAGATCTTCTGGCTTTTAGAATCTCTGTTGAGATGTCTGGTACAATTCTGATAGGTCTGCCTTTATAAGTTATTTGACCTTTATCCCTTACCACTTTTAATATTGTGTCTTTGTTCTGTCCATTTGGTGGTTTGATTCGGGTCCAATCTATTTAGAATTCGGTAGGCTTTTTTTTTTTTTTTATGATTATGGGCATCTATTTCTTTAGGTTAGGGAAGTTTTCTTTAATAATTTTTTTGAAGTTGTTTACTGGCCCTTAGGGTTGGGAGTCTTTTATCTCTTCTATACATATTATTCTTAGATTTGGTCTTTTCGTTGTGTCCTGGATATAGCAGCCCGGGCTGGCATTGTTTTTTTCTTAGCATCTGTGTGACATCTTTTCAAGATCTTCTGGCTTTTAGAATCTCTGTTGAGATGTCTGGTACAATTCTGATAGGTCTGCCTTTATAAGTTATTTGACCTTTATCCCTTACCACTTTTAATATTGTGTCTTTGTTCTGTCCATTTGGTGGTTTGATTCGGGTCCAATCTATTTAGAATTCGGTAGGCTTTTTTTTTTTTTTTATGATTATGGGCATCTATTTCTTTAGGTTAGGGAAGTTTTCTTTAATAATTTTTTTGAAGTTGTTTACTGGCCCTTAGGGTTGGGAGTCTTTTATCTCTTCTATACATATTATTCTTAGATTTGGTCTTTTCGTTGTGTCCTGGATTTCTTTGGGTTAGGAGCTTTTTGCACTTTGCATTTTCTTTGAATGTTGTGTCAATGTTTTTATGTTATCTTCTACACCTAAGATTCTCTCTTCTATCTCTTGTATTCTGTTGATTCTCTTTTCTAGGTTTTCCATCTCCAGGGTTGTTTCCTTTGTGATTTCTTTATTGTTTCTATTTTTAAGATCCTGGGTGATTTTGTCCAATTCCTTCACCTATTTGGTTGTGTTTTCCTGTATTTATTTAAGAGTATTATTTATGTCCTTCTTAACGTTTTCTATCATCATCATGAGATGGGATTTTAGACCTGAATCTTGCTTTTCAGGTTTGGGATATCCAGGGCTTACTGTAGTGGGAAAAGTTGGTTCTGATGATGCCAAGCAGCTTTGGTTCCTGTTGCTTGTGTTCTTGTGATTGCCTCTTACCATTTGGTTATCTCTGGTGTTAGCTGACCTTGCTGTGTTTGATTGGAGCCTATCCCTTCTATGAGCCTGTGATCCTGGGAGTGTCTAAACTCCTATAGGTCAAGCTGTCTTTGTGAGACTGTGCATTTGGGTGTGTCAACACTTCTGGGGGTCAAGTTTTCTCTGGGTGGGATTGGGCTCTATAGGGCTGTAGCACAGGGTCTGATCCTGGGCACAGATGGAAACCTGAAGGATCATGTCCCTGACTGCATGACAGTTCCTGCATCCATTGGGCCCTGGGTGGTCCCAGTTAGGTCAGGTTTTGGGGAAGTAGTGGTTGTCTCACCTGTGAGCCTCGGTGTGTCAGCCCTCCTTGCAGTCAAGCTATTTCTGGGTGGGATTGGGGGGTGGAGAGCTATATAGCACATGGTTCACTTAGGGCTGCAGATAAAAACTGGAAGCAAGTTGTAGACTTTTAAATAGAAGCAATGAGCTTGGTTTCTCAGGTGTATAGCAGAAGTGAGATAAGGTGTTTAAAAGAAATTTCAGCCTGAAGTGGGAACAAAGAGTATAACTTCAGGAATGAAATATTCTGTCCAGAATTCAAGGTTCTGGTGTCCAGAGACTTAGCATGTTTCCTCTCTGAACTCAG
Seq C2 exon
GATGTCGAAGAAGGGAAGGACAGTCATCTTCTCCATCAATCAGCCTCAGTACTCCATCTTCAGATTCTTTGATAGCCTCACCTTAGTGGCTTCAGGAAAACTCATGTTTCATGGACCTGCACAGGATGCTCTGGAGTACTTCACATCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039890:ENSRNOT00000061267:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(21.5=63.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]