RnoINT0012285 @ rn6
Intron Retention
Gene
ENSRNOG00000029762 | Acr
Description
acrosin [Source:RGD Symbol;Acc:2024]
Coordinates
chr7:130543614-130546916:+
Coord C1 exon
chr7:130543614-130543897
Coord A exon
chr7:130543898-130546770
Coord C2 exon
chr7:130546771-130546916
Length
2873 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
GCTGTGTGGCCTGGCTGCAGCCC
3' ss Score
4.77
Exon sequences
Seq C1 exon
AAAAGTCTATGACTGGAGACTGGTTTTTGGAGCCCATGAAATTGAATACGGAAGAAACAAGCCAGTGAAAGAGCCCCAGCAGGAAAGATACGTGCAGAAAATTGTCATCCACGAGAAATACAACGCTGTGACCGAGGGGAACGACATTGCCCTCTTGAAAGTCACTCCTCCTGTTACATGTGGGGACTTCGTTGGGCCTGGCTGCCTACCTCATTTTAAGTCTGGTCCTCCCAGAATCCCCCACACCTGCTACGTGACTGGGTGGGGATACATAAAAGATAACG
Seq A exon
GTGAGTATATGCTGGGCTCCTCGGTGGGCACTGGCGCCCATTCTCCTTGCTGGCTGTCTTTGCACGGCAAGGGTCACGATGTGTGGCTAAGCTGTTTTACTCCTCTCAGCATCATGAATAGAGTCTGGGCACAGACCCTTTCATGGCTGGAGAATTCAGGGTGAGGGAAGCTGAGTCCCATGTCTGAGGTCATGGTGTCAGGTTGTCAGAAGGCGTGACTGGCAATAGCCCAGCTATCTATGGGAAGGCTGAACGGCAGGTATAGTAGAACCTTGACATGTTTGTGAATGCAGCAATAATGAGTGTGTGTGTGTGTGTATCAGCTGGAGGTCCAGCTGGATGGATTTTGGACATTGGAAACTTGAACTGAAGCAGCCTTTGCAAAAGACCTCTGGATGTGGTGGTGTTGCCATGAGAAACACAAGGTGTTTCCCTCACTTGTGCACAGTTGAAGCCTCTCTGACTTCTGTGGTCTTAGGGGTGTCTTAGTTCACCATCAGCAGTCGGTACCTAGGCCTGTTCCCCTCTGTGGATAGTCGTAGCACCAAGACTCACTTTTCTTTCCAAATGATGTTCTTTACGTGGACCGGGAGGGATATAGTCGGTGAGTACACTTTTCCTAGGTCCATTAGTTCAAGACTCCTGGAAGGGCCCAGCAGATCTCTTGCTATTCAAGATGACCTGAGTGAGTAGGGGAATGTTTTCCGTAGTAGGCAAGCTAACAGGGGACACAGGAAGTGTTCTAGAGCCACCGATGACTCCACAGTTATACCCTGACTCCCAGACCACCTCCCCACATCCTTAAAGTCTAGGGCCACTGTCAATACCAGAAGTAACAGGTCACTCTCTTAAGTCCCAACCTTAGGCCACAGGGCATCCCTGGGACAAGAAGACCTAATAGAACTTGTTCTCTGCCCATGAACAGGGCTTTTGTCTTCACAAGTACGATTTTTTTTATTGCCACATTAGAGATGTGAAATGTGACTGAAATTAACGGAGGCATTGGTTTCTTCTTTGGTTTTTGGAAAACTCGGCCTTCCTGATTTGAGACAATTGAGTCATTTGAGGCTTGCCTTTTTTCTTTTTTTCTTTCTTTTTTTAATCCCGGATTTCATCTCTTTTTCTAGAGGTGATCTCAGTCTTCAGAACTGTGGCTCTTAAGCTGTGGTTTGGGGGTCCTTCTGACAAACCTCTGCTCCCAAAGACATTTACATTCCGATTTGTAACGGTAGCAGAATTACAGTTATGAAGTAGCAAGGGAAATAGTCTCATGGTTGGGGGTCACCACGGTACGAGGGACTGTATTAAAGGGTCACAGCATTAGGAAGGCTGAGAACCAGTGTTTTTAAAGGTTTACGGCCCGCCCTGTCCTGCTTTAGTTTCCGATTGCTCCTTTGGTATGTGACGGCAGCTATCTGACGGGTGCGGGCATCCCATCCCATCTGCTGGTGCCCTGGCCCTGCTCAAGCATGCGCACAGCCCGATTCAGCCCTGTCTTATCTGCCCTCCGATCACTTACATAGCCCGTGTTCTTGTAGATCTTGGGTAGCTGGTCTCTGGTTCTAGAATCCCCTTAAATCAGTGGGGGTATCATTTTCGCCCTGCAGACACAGTTTCCTATCAAGGCCTCAGTCTTTAAAAATCCCTAGGCCCCAGACTCCCATGGCCTGTTTTATGTGCTTTGTTTTGCCTCCTTCATGAGTTTATCGGCTCTGGGGTTGGAAGCGCCACCTAGATACCGTTCCTTTAGCTGGGACTTTGAGGTCTTGTGGGCCTCTTATTTAAATGGACTGACACAGATGACTTTCGGTCTTAGCCACAGACCTAAAAATGTTACTCATCTTAATGGCCGGTGAGTTTGGGTTGCTGTGGTTATTTAAGTGTCATCCCCACCTCAGGGGCAGAGCTTGTGCAAACCTCTCAGTGATGCTCAGATGTGGGGCGGGGCAGGGTGACAGCTCTATTGAAAATGGAAAATGAAATAAAACATCCCATGTTTTAAAAAAAATCCTTTAAATACCCAAAGCTCAGGAAACACACGTTAAGCAGATGCCTCCTGAATGCTTGGCCCTGCATATACTGGCCCCGTGCTTTTCCTATCTTATCCCCTGCACTGCCCGTGACATCTAACCTAAAGTGCCATGGGAGGGGGCTGTCCGAGCCACACCATGTGGCAAAGAGGCACAGCTGTGCTGGTTCTGATGCTTCGTCTTGAGTCCGGTACACGCCAGCTGCCTGAGCTGAAGCCTAACCCCAAGGATAGGGTCAGTGGTGTGAATGAGGCCTTGACTCAGTTTTCCTCTTCCAAAACTCTCCTTAAAGCAGAGCTGAGGCACACGGGAGGAATCTGTCTGAAGCTGGGAGGAGGAGTCCCAATGAAGTTGATAAAACAAAATCAAAACCAAAAACCACAAAAACGGGGAGGGTGACTTCTAGACACACGATGGAGAAGGAATGGTGTGTCTCAGTCATGGGTGTGGAGAGATGTGATCCTGGCCAAATTCTTGAAGTAGGTGGGCAGCGCTCCAGTCCCTGAACCAAAACCAGGAGGAAAAGGCCCTCGGACTTAGCGCTTGGCAAACAGTAGCTATGCTTATCAGGGAGAGCTACAGCTAGTCTACACATTTCCTCATCCATTGCTAAGGTAGACACCATCTCTCCTTCCTTTCTTCCTCCAGGCAAAATTCTTTTACCTCTACTCCCACCTGTCCTTTCACTGTGCCTTTCTTCCCCTCAGGAGTGTGAGGTGAGCCTGAGGGATCTTGGTTTAACCAGAGCACTGCATAGGATGGACGGAAATTCATGGTGGGGGAGGAGGCAGGGCTTTCTCCGTCTCCTCCTTGGGCACTGACCGCTGTGTGGCCTGGCTGCAG
Seq C2 exon
CCCCCAGACCATCACCTGTCCTGATGGAGGCCCGCGTGGATCTCATTGACCTCGACCTGTGTAACTCCACCCAGTGGTACAATGGGCGTGTCACATCAACTAATGTGTGCGCAGGGTATCCTGAAGGCAAGATTGACACCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029762:ENSRNOT00000045647:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.9=100)
A:
NA
C2:
PF0008921=Trypsin=FE(19.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]