RnoINT0012604 @ rn6
Intron Retention
Gene
ENSRNOG00000056756 | Actn1
Description
actinin, alpha 1 [Source:RGD Symbol;Acc:70907]
Coordinates
chr6:103393462-103401126:-
Coord C1 exon
chr6:103401041-103401126
Coord A exon
chr6:103393555-103401040
Coord C2 exon
chr6:103393462-103393554
Length
7486 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCC
5' ss Score
9.16
3' ss Seq
TTTCTCTGTTTCATCACCAGGCG
3' ss Score
10.81
Exon sequences
Seq C1 exon
ACATCGTCGGAACTGCCCGGCCAGATGAGAAAGCCATTATGACCTATGTGTCTAGCTTCTACCATGCCTTCTCTGGAGCCCAGAAG
Seq A exon
GTACCCGGGCCCCTGCTCCTTCTCTGCCCAGCACACCTCATGCCAGAACCCAGCCATGCCCTCCTGCCCCCTCCCTCCGTCCATCCCTCCATATCCAAGTGCAGGGACGGCCTGGTTCTGGTCTTGTGGGTAGTTAGCTGTGTTTCTAAAGAGGTCTTGTTTGCCTCCTCCCCAGCTCTGCATTTCTGCTGTCTCTCACCAACTCTCAGTACTGAAAACATATAGCAAAGTGACAGTCCTCTGGAACCTCATGCCCCAGCCGCATGGCCCAGGCAGAAGGGTGGGGTGTGTGAGAGATCAGTGGGTCCCGGCTGCAGGAGACCAAAAGCCGCAGCCCCACTCCTGTGGAAACAACAGTCTTAAAAGTACTGGGGCTTCCACTGGGCTATGGTACACTTCCTCTCTTCACTTACCAGTTTGCAAAGTGGTCATACCCCTGCCCCCTCAGGCATGATTTAACAAGTCAGTCTCCAGCCCTTGAACCCTATCCTGCCTGGATCCCCCACTATACACTTTGTTCTTAGACATAAGCATGACCTGTGGGAGGAGGGGAGAGGATGTGAATGGCAGTGAGGCCGCTTCTGGTATCCTGTCCCAGAAGGCTCTGGGAGGCAGAGGGTAAAGCCAGGTTGTATGGTTCTGTAATACACCAGAGCCCAGTTCCTGCTGTGGGCACTGGGAAACTGGAAATTGTCACTTAGTACCATGCTTAACTGGGGCAGCAGGCGTCCCTCCCAGAAGCAGCACATTGGCTGTGACCACAAACCTCCATGGCTTTGGTCCCTAGGCCTGCCATATGTTCCTCATGACCTCAGTGACCTGTCAGAAGTGCATGATGGGAGGCTCTGCCCCCACCCCTACCTCCCTTGCTCATTTCCCTGTCTGCTCACCTCCCTCTGGCCTGCTCCTCTCCTCCTGCTCACTCCCCTTCTGTCTTGTGCTCTCCGTCTGCTGCTGCTGTTTGAGTTTTCTCTGTACTGCTCTACTCTCTCCTCAACCTCTTCTCCTTCTCTGTGCAGATGTGTAGGCACGATAAGGCCGGAGGGGAAGGCCATGTGACCTAATGTTTCATGTCACTGCCACGCCTTCTCGGTGCGCAGAAGGTGAGCTCACCCTCGGCCTCGCCCACTCTCCCGGCTGCCCTTTGGTCCATCTTGACCACCTCTATGGACAGTAGCAGTAGTTCCTGTGTGAGAGAGGGTTAGTTAATTCACCCATTCCCACAGAGGACAGGGCACTCTCAGAATCCTGGCAAGCACACTTAGGGATGCCAGAGAAGCCCAGCCTCTTGGTGGCCTTCCTTTGTGTCTTGGTGAACACTGGGCATAGGGGACCTCACAGGGGAAGGCAGACAAACTGTCAGAGCCTGGATCCTAAGCCATTCCCTTAAAGACCCAGGATCCCTGTTACCTCTGAACCTTTCTTCTTCTTGCCTAATCAAGACCATCTTCTCAAATCTAGGCAGCAGTCAGGGTGGGGAGAAGTCTTCTGCCTTCTCCCTGGTGTCCAGGCCAGAGTCCTGAATGTCACTTGCCAGACAGGCCTTTCATGGATAGTTGCAAACAATATAAGAATACCACTAGGATGCCGTAGACTGTGGAACTTTGAACATTCATTACTAAAACCTACCCTGCAGAGAGCAGCAAAACTGTTTTCCTTTTCTTGTTTTTTCTCTTTTTTTTTTTTTTCAGTTGGTCTTTTTGTTGGCTTGTTTTTGGTTTTTTGTTTGCTTGGGTTTCTTTTTTGTTTTGTTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTCAAGACAGGGTTTCTTTGTGTAGTCTTGGCTGTTCTGGAACTTGATATATAGACCAGGCTGGCCTTGAACTCACAGAGCTCCAACTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCCTATACCACCACCATCTGGCTTCTGGTGCTGGGGTTCAACCCAGAGCCTTGTGCTTGCTAGATAAACATTCTACCACCAAGCTTCATGTCCAGCAGAAAAAATGTCTCTGCCTGCCCCACCCCCCTCTCTCAGAGAAATACTTTAGGAAAAGGCACCTCCAAACATTGCCCAAAGACAACCAGATGAGCAGTCAGCAGCCCTGGTGCCCAGGGCATGGGCACCTGGACCTGCCTTTCTACTGACTGCAGAGGATGCAGCCCTTGCTGTTGGTTCCTCAGTGGCCAGCCTCCAACTTCCAAGGGATCCTCCCTGCTGGCCTCCTGGCTCTTCCTCTGTCCCCTCACCTCTGCTGCTCTCCTCCCGACCTCTCCTGAACCCTGTCCCCCACCTCTTAGCCAGTATATGAGCCGCCTCTCTGCTTGCCTTGATTGGGCGTTTCTACTCAGCCTGCTGACCACATAGAGTGCACTGCCAGGCTGACTTGAGGTGGCCTCTCCTCTCCATCCAACTATCCCAATCTTCTTTTTCATGATCCTTTACCTTTAAGGATTCTGCCCAGGGCTTCATGCCTGCCGACACTGGCCTTGCCTGTGTTTGCTGCCTTCTCTGTGGCCTGGTTGGAGATAATGCTCAGGGGGTGGAGGGTGTGCATTTGTGTGTGTGTGTGTGCATTTGTATGTGTATGCATTCGTGTGTGTGTGTGTGTGTGTACACATGTGCATGCACAGATGCATGGCATGGATGAAGTGTATCTCTTCTGTGTATGGTGGGCAGAGTGTGGGGTTTGTGTGGCTATCCCTCTGAAGTCGTCCTCCTCCTCCGTGCTCTCTTCCCTTTCTTCATCCCTGTCGCAACCATTTCATGCTTTTGTCCATACCCCAGAATGGGAGCATAGACAGTGGCGGAGTGTGGGGCATACTGTTTGATCCTCGGGTCTCCTGGTCAGAGACCTCAACCAGAGTTATCCCACAGCACCTGCCTAGGAAGATCGTCTCTGGAGGGATACAAACCTCCCGCGTGGGGGACGAGGAGATGAACGAGCCTTTCTGCATCTCACACTCTTGCCTTGACTCCCTCTGTGGCTAGTCACCGTGACAAACACCTTCCAGAGCTATATCCATGACCCACCCTCCTCTCCATACCTTTCTCTGGCCAGTCAGACATAATAGAAGTAGAAAATTCCCAGACAAAAGCCATGTGCAAATGCCTGTATACATTGACGTGCAAGCATATGGTGTACACAGCTGCCGAGAGACTGCCCTCACTGGGTGAGACCGACTTCTGTATAGAATGCTGGTTTGCAGTCTGATTCCTTCCTTCCCAGCCCAGGTTTGGACTGGGTGGGGGCGCATCAAGGTTTTGTTTATGCTGCTAGTGCTGTGGGGGTCTCTTGGGAGCTATTTCTAGGCCTGGCTCTTGAATGGGAAGACTTGATTTGATGCGGGTGTTTCTGGTTGCTTATGGACAGGTGGAGCTGCCTGCATCCATCCACCTGTCCATCAATCACTCGGTCCTCCAGAGTAAACCTTCTAAGGGACAAACAGTATTCCCATTCACAGAAGCTGTCTGGAAAAGGAAGGAGGCAGTGCCCGGAGCAGGGCTTGCACTGCAGCTGGTCTGTGCTGCCAGGTGCTTTCTGCGAGCAGCAGATTGGCGCTTGGAGGCTTACACTGAGATCAGGTGCCTCCAGGAAAGGCTTGGGTACCACTAGGGAAGGGAGAGGAGACCATCACGAGGAGTTACTAACAGTGGTGGCTCAGGTCAGCACAGCTAAGGCAGAAGCTTCGAGGTGTGAGAGGAGAGGAAGTCCGTATTACCAGGCCACTATTGAATGGGGAGTTCTGGAGAAATTGAGGCACAGGTAGAGGGATAGATATGTGTTCCCAAACCCATCCCAGCCTGCTTGTCTTGGAGAAGCCCCATTCTGGGGCTAGGAGCCATTGCTGGACTTAGCAAACCCAAGGGAAGGGTAGTAGTAGATTGGGCAGGGGAAGGGGTAGACTGCGCAGTAGTAGTTGGTAGGTAGTCCAGGGAGGAAGAAAAAGTAATTTAAGCTAGAGTTAGAGATCCTGTAGATCATAGGTAGGAACTATGGGTTGTGGGTGATGGAGCCCTGGTATGTTACTTTGCCTAGTTTGAATATTTGATGACACTTTAATTGATGACAGCCTCTCTATAAAAGGACCTATCTCAGGTGACTCAGGACTCTGATTATCAGGGTGGAAATTTGGCATGGGATACCTAAGTCTCTAAAAAACAATGGCTCATGGCTTTGAAAGCGATTATAATATAAAATTAAATGTCATGTGGCCAGGTCTGGTGATACATGTCTTTAATCCCAGCGCCTGAGAGGCAGAGAGGTAGGTGGATCTCTGTGAGCTCGAGAGCAGCCTGGTCTACAAAGCAAGTTCTAGAATAGCCAGAACTACATAGAGAAACCCTGTATAAAGAAATAATGCGTACGTTAAGTTGTATGCATAGTATGGTTGAAAGTGGTCACAAAGACTGTGAAAACACACATCTGGCCCCTTCCTTGGGAGTATTTTCTCGGCCCCTTGACATCTGTGCTTGCACACAGTCTGTCATTTGGAAAGACTTGGGCAGCCTGGTTCTTGCATGGGTTTTAGAACAACCCACTCCATCATAGAAAACCCAAAGTCAGAAGCCAGCCTGGGTTTTCTTCTGAGGTGGCTGCCAACTCCACCTTTCTCCCAAGTCCATTTCTTTTCCTCTCCTGGGCCAAGTTCCTCTCTGGTACTTCTGATCTCTAGCAGCCTTGCTAGGGTTGCTTATGCACTGTGCTGCTGTCCCCTCCCCTGACCCTATCTCCGCTCCCACCATGCATGCCATGGGCTTCTTGTAGCTCTGAGGAGGGGAAGCCAGATGTTTGGGATGACTGCTGTTGCCATCTGTAGCCTGATTCCCCTCATTCTATGAGAGAGGGATGCAGGGCCAACTGGGCTGACTTGTCTCACTTCTTTGACTGAGGTTGGTTGGTAGTGACTAGCCTCTCTTCATAAGGAGGCCACCTGAGAGCACACATATCACCTATGCCCCTGGAAGGCTTATTCAGGGTTAAAGAGGAAGTGGAGAACCAGTGTTCTGAGGACAGCCTCTGTCTCAGAGGACTACTATCCCTAAAGGTGACCCACAGATGGGTCTTTTGTAAAGAAAGCACTCTTGTGTTCGGTTGGCTTGTCTTCACCAAAGGCAGGTCCTTTTGGTGTATGGTGGAGTCCTCTGGCTTTCTCTCTCCATGAAGCTAGCCTGAAAAGGATAGGCCAGGGTGCAGGCTTCGTTTGTAAAAGGGTTAGTTAGATCCCTGCAAAAAGCCCCCAGGAGCCCCCCGTGTGGAAGTCTTCCCCACTTTTCATTCGAAGGAGTCGTCTTTGGCTGTGGAATGGTCCACAGACCGTGACAAAGCTTTCGAGTCTACCTGGCACCGCTCTCAAAGTTGTGCAAACTCTAGCCGGGCAGTGGTGGTACACACCTTTAATTCCAGCACTCGGGAGGCAGAGACAGGTGGATCTCTGTGAATTCCAGGCCAGCCTGGTCTACAGATCGAGTTCCAGGGTAGCCAAAAAGGATGCAAACTTATAGCTGTTGAGCCCAGGATTTCAGGGTGCGTCTGGAGGACAACACACTTAAGGTGAGATTTATTTACATTAGAAACTATAGCAGTAAGCTAGCACGGTGCTGCACACCGGCAATCTCTGTACTCTGGGGTGTGAGGCAGGAGAATCTTAAGTTCTGGACCAGCCTGTTTATCTACAATGAGGATCTATCCACGGTTTGTTAGTGGCAGTGTCTGCGGCTGTACCACCTCCTGGTTGCCTGTGGTCCTCTGCCCTAACTTCAGTAGAAGTAGCTTTGGTGACACCAGGAAGATTGTCACCTCAGCCAGCTTCATGGAGCATACTGACTTAGGGCTGTAAGTCTGCAGTCTTTGTGGATCCTGCGTCTTAGCCTGCTACTAGGCTCCTGAGAAGCAACGGTTTCCTCGGTGCCTCAGGTAATTCTCTGTAGTTACTCAGTGGTTCTCAAGAAGGATGACAAGTAGGACGTCTGTCTGACAGAGGACCATGTCATCTCCAGGACAAGGGTTGAATTGAGAGAAGGGGTGATGACTGATGGCTTTCATGGCAGTCAGGAGTCCCAGAGTCTCTATCCAGATGACTCTTAGATCCCTCTGCCCACTCCCATGTTCTCCTCTTGGAGCCCCAGCTGTTCCAATACCCACACACCATAGGATAGTCTCTTGACATTTCCCTTGAGTGAGCTTTAGGACATTTTTGCTCTGTCCCCATCCCCTGTGTGTCCCAGCACACTTACTCACAGGCATGGGTTTGGTTGCCTTTTCCTCTTTGAAATTTTTCTTGGAAAAAGCCACATGTCATAGACTTTCCTTCTGGTTCTCGGGAAGTTCTTCACGCTCGGTCTCATTTTGTGGTAACAGAAGGTCTTTCTGTTCATTAACCAGATTTAGGTTTTGCCGCCTTTTCTCTTACACCAGATGTCCTCTGTAGGTCACCTGTCCCAGGGTCTCTGGGTTCATATCTACTTTTTCATAGGCATTGTCCTCTCTAAACCATCTCCTTTCTACCCCGTGGTCCCAAAAGAGCTTCAGAATCAAAGTGTAGGGTTGGCACATGTATAGAAACACAGCTCAACTTCAGAACCACTCAAGTGGGCCAGGGGTGGCAGTGAGTACGTTTACACCCAGCACTCGGGAGGTAGAGGCAGGCAGATCTCCATGAATTCAGGGCCAGCCTAGTCTACAAGAGTTGAGTTCCAGGATAGCCAAGGCTACATGCAAGATGTTGTCTCAACAAACAAAACCCCCAACCACTTAATTGGAGTGGATTTGGAGCCCAGGGTCCCTGCTGGTGTTGGATAAGAGCATCTTTTCCAGCCACCAGAGTCTCCATGGGGCTAGGCCTTGTGGCTGGCTACCTTTCCATCCCTCATTCTTCTGGATGCTGAGGATGATCTCTGGTCCGCCATGGCCCAGTGCTTGGTCCACCGTGTGATCTTAGCTGAGCCATCAGTATTTGTGCTGGGTTTCCTAGGCTTGCCCCTAGTGCTGGGTTGATCCTTACATCTTATCCTCCGTGCACTGCCACGACCTTAGGTTTTCTCTAAAGGTCTTTGAACCAGGAGCCTTCAGAGAATCTTCAGGGACCCTAAGAGACCTCATTGTCAGCCAGCACTTTCTCCTCACATCTTCAAAATCCCATCAAATCCAGCTCAAGATTCCCAAGGCCTGTGATGCCTAGAATTCCAGGCTGGGCATGAATTTCTTCCTCTCTCCACCTGGCCTGAGATATTTGAATGCCTTGGTTACTTGATTAATTTCTTCCCAGCATGCATGATGGAAATCAGCCCTTGTCCAGGGCTGGCAAAGAGGTGCTGATGCAGAAGACAGTGGGGGTTGGGGGAGGGTGGGAATGTGACTCAGAGCCTCTGGGGCTTCTTTCCAACCGAATGGAGTGGCAGAGTGGAAGGGGTTTGTTGGCACAGGTGTGTCCATGTACCCCTGCTGCTGGGGACAGGCTGGTCATGACCTTTCTCTGTTTCATCACCAG
Seq C2 exon
GCGGAAACAGCAGCCAATCGAATCTGTAAAGTGTTGGCCGTCAATCAAGAGAATGAACAGCTTATGGAAGACTATGAGAAGCTGGCCAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056756:ENSRNOT00000079824:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0030726=CH=PD(23.1=82.8)
A:
NA
C2:
PF0043516=Spectrin=PU(9.9=35.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]