RnoINT0017298 @ rn6
Intron Retention
Gene
ENSRNOG00000016696 | Angpt2
Description
angiopoietin 2 [Source:RGD Symbol;Acc:621861]
Coordinates
chr16:75993302-75997698:+
Coord C1 exon
chr16:75993302-75993457
Coord A exon
chr16:75993458-75997576
Coord C2 exon
chr16:75997577-75997698
Length
4119 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
ATCCTGTTTGTTATATACAGGTA
3' ss Score
8.31
Exon sequences
Seq C1 exon
CTGGAGAACTACATCCAGGACAACATGAAGAAGGAGATGGTGGAGATCCAGCAGAATGTGGTGCAGAACCAGACGGCTGTGATGATCGAGATTGGAACCAGTTTGCTCAACCAGACGGCGGCACAAACTCGGAAACTGACTGATGTGGAAGCCCAA
Seq A exon
GTAAGTGGCACACGAAAGCCCTGGGTACAGCACGCAGCTAACAGACCATGCGCCTGAGCTGGTGTACAGTGTGGTAGTGGAAAGCTCCAAACCCCAGCTGGGAAGGAAGGGGAGGCTTCAGCACTGCAGGGTTAAAGGACAGTTAGGACTTGGAGGAAGCCAACACGGTTTTCATTTTCACAACAGGGCATGATCCAGAGGGAAGAGCCCAGGAGAGAGTGAGTCTGGTCAGGTGCTCAGTTTTCTGTAGGTTGGCTTCCTGAGCCAAGAACATACGTTTTGGAAGCTTTAGAAGTTAGTATGATCATGCTCTGAGCTATATCTATCCTTTAAATACAAAAGGGTACACACTGTAAACCACCCCAATATTCGATGCCTCATCTACTGTTCGGCTAAGAGGACCAACTGCTAGATTTCAGCATAAGACAACAGGTCTCATACAAGAGAAACCACAAATTCAGATGCAGATGCTCGAAGCTAACCATGACTGAGCACGGGGTCTCCAATGGAGGAGTTAGAGAAACGACTGAAGGAGCTGAGAAGAGCAACAATATCAACCAACCAGATCCCCCAGAGCTTCCAGGGACTAAACCACCAACCAAAGAGTACACACGGAGCAACCAACGGCTCCAGCCACATATGTAGCAGAAGATGGCTTTGCTGGGCATCAATGGGAGGAAAGGCCCTTGGTCCTGTGAAGGCTCGATGCCCCAGTGTAAGGGAATGTCAGGGCAGTAAGGTGGGGGAGCACCCTCATAGAAGCAGAGGGAGGGGTGATGGAATAGGGGGTTTCTGGAGGGGAAACCAGTAAAGGGGATAACATCTGAAATGTAAATAAATAAAATATCTAATATCTAATGAGGGAGAGAGGGAGGTAGGGGGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACACCGAGACCACAAGCCTCTCAAGCTTGAGACAAGGCCAGCATGGTGACAATGATCTTTCAGAGTCTCTCTAAAAACTGTTTTTATAGAGAAAACAGTGCATCAAAAAGTTTTATGGAAAACAGAGTAAGGAAATTATTTAGTTATCACCTTTCAACAACATCAGGCGTTTAGGAACAATATGAAGAAACCCACGTTTTTCACAGTTCACAAGGCACCCAGATTTAACCCTGCTTGTTAGAAAGTGTTTACATGAAGAGATATAATAGGTTACAAAGAAAACAATGTGTCCATGTGTCAAGCCAATTGATAACATAAAACAGTAATGGTTAGGTGACATTCCACAGCTTTTGACAGTAATTCTGGGCTATCACGCTGTTCCAACACATCCAGTAAGAACAATGCAGCATTCTTGTTTTTTTCTGATACAAGCAATAAAATGTTAGGACACAGAACAACTATGCAAACCTTTGTAACATCCTGTGTAAGATCACAGGGTTTAAAAAGTGCTACTATGAGTTAGACATCCTATGACTGAGGCTAACAGGAAAACAGGCCAGGGATGGAGAGAAAACAGCTGCAGGGTCCAAATAAACACATCAACACGGGTGAGCCCCAGGAAGGACATTCAGGGGCTCTCAACCCAGTTGACAGCAAGTGTCGCTCACTTATGGATGATACGGAATAGGTTCAAACTAAAACATGAACATTTCTGTTTATATGCAAAAGAATTCTAAACTTGCCAGAATGCCATTATTTGACACCCTACATAGCTGGAGGTCTGAGATCTTACAGCCATTACCTGACTGGAACAACTCAGTATCAGCGAACACAGAATCTTAAGATTTATCCTCTTCAGAAAAGAGATGGGAAGGCTGGTGAGATGGCTCAGAGGGTAAAAGCGCTTGCCACACAAACATGATGACCTGAGCTCGAACCCCTGAACCCATGTAAAGAGGCTGGATGTGGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAAGAACCAAAAAAAAAAAAAAAAAAAAAAAAGAGGCTGGATGTGGAGGTGCCTATCCATAAGGCCAGTGCTCCTAAAGCAAGGTGGGAGGCAGAGACAGAGCTGTCTGGATGACTGGGGAGCCTGACGAGCCTAGATAAACAGCACTTCAGAAGAAAGAGAGACCCTGCTTAGCGAGGCAGAGACAGCCACGTCCTCACAGTGCCTTGTCCACCACACGCGTGCACTGGCATGTGCGTACATACCTCCACATACACACCACCCCCTCCGCTCACTCCTATACACGTGTACATACTCCACATACACACCACCCCCTCTCCGCTCACTCCTATACACATGTGTACATACCTCCACATACACACCACCCCCTCTCCGCTCACTCCTATACACATCAGTCCTATAACAAGCAAGTTTCTGTTGGCTTCATTCTCTGCCTCTTTCCGAAGCTGTCCTCATCTTATAGTCCTCATGGATTAAACAGGACATCAGACTGTCCCGTTCTTTAAAGAATAAACTGCTATTGAATGTCTGTACAGAGAAAACAGAGAGCAAAGCCATACTGATGGCAGGGCTCTCACCGCCTTTGCTCATTTCCAGAGGCGTTCTGCTATGACCTCAGCCAGGCATGACAAGGACCAGACGTGCCCGGCACCTGCACGGGGAGACAAGCCAGGGCTGTGCTGATGACAAGGACCCCCACAAACAATGATTCTTTTTCAAGGTCCCTGGTTGCTCGGCAACGAGTCAGACTTCCATTAACAGGTGATATCACATCCTGAGTGACACCACACAAGGATGTGAGTAGCTGATTCTTCCTGCTGGGGGGCAGCCAGGCACCGAAGAGCCACACAATGGGCAGCACTGGCTGCCACTGGAGAGTGACATTTCATTATTCCCTAATTGGCCAGAAGGGCTTTTAAAGTAGGAATAAGAAAATAGAACAGAAGAAAGAGAAGGCTTAACAAGCGGGTTAAGCTGGGGACGGCAAGGACGCGTGTGTCTTTGTTGCTTTGTCCAGGAACAGAAAGATGTTTCTGAGCAAGAGGAAATTCTCTCATAGACTTAAAAAATTAGATTTATTTGGTTTGCATGAGTGCATGGTGTGTGTGCATGTGAGTGTGCGTGTGTGTGCCTGTGTGTGTGAATGTGTGAGTGTGCGTGTGTGTGTGTGAGTATGGGTGTGTGTATGGGTGTGTGTGTATGGGTGCGTGTGTGTGAGTATGTGTGTATGTGTGCATGTGTGTGTGAGTGTGTGTGTGTGAGAGTGTGTGTATGGGTGTGTGTGTGTGTGTGTGAGTGTATGGGTGTGTGTGTGTATGTGTGTTTGTGTGTATGTGTGTGTAGGTCAAAGGACAATTTGCAGGAGTCGGCCCTATCATGGGGAGACAACTTAGGTCACTAGGCTTGGTGGTAAGTGCCTTTATTTGCGGAGCCATCTTCCTAGGCTGAGACAATTTTTAAAATTTATCTATCAATTTTGATTCATAAGATGTTTATTTAATACCTCCATTTGTTACATTACATAAAATGATAAACTGTTACAGATGGAAAAACATAATGTACGACTTGTTACTATGTTTCCCTGACTTATTTACCTCAAAAGGATTTTGTCACTTATTTACTACAAAGAGATTTAAAGGTAATATAGTTAGGCCTGTTCCATGATACCAAAAATTTTTATGGGCATAAAAATTTTGCCAGGCCCAGATGGGGGGGAGCCCCTCCCTGCTGAGGAGCCACTGGCAGCTGGTGGCTGCTGGGGAGACAGAATTCTTCTCTTCCTTCTTTCTCGTTAAACTGTGTGGGCACAGGAAGATCTCCATGCTGCGGTGCATGGCCCCCACACCCAGACTCCCATGGGTAGCACTACTTGGACCAGGCTGAATATTAGAAAAAGAGTTGGGAGAGGCTGTGTTTGGGGGGGGGAGGAGGAGGGTGGAAACGGGGGCGAATTATGATCATTTTTATGGTATAAGACAAGAAAGACCACATGTCGAGACAAGGCAGGTGGGCTACTGAGTAATACGCCTTCTGATCACTTTGGTGACTGAACCAAGAGTGGGCACAGGTCACATTCATCAAGATTACATCACACCAATCAGGATGACAGGCAGTAATCCTGTTTGTTATATACAG
Seq C2 exon
GTACTAAACCAGACGACAAGACTCGAGTTGCAGCTTCTTCAACATTCTATTTCTACCAACAAATTGGAAAAGCAGATTTTGGACCAGACCAGTGAAATAAACAAACTACAAGATAAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016696:ENSRNOT00000022774:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]