GgaINT1006105 @ galGal4
Intron Retention
Gene
ENSGALG00000026890 | ANGPT4
Description
angiopoietin 4 [Source:HGNC Symbol;Acc:HGNC:487]
Coordinates
chr20:10241262-10241732:+
Coord C1 exon
chr20:10241262-10241417
Coord A exon
chr20:10241418-10241610
Coord C2 exon
chr20:10241611-10241732
Length
193 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
CTCCCAACGTCCCCGTGCAGGTG
3' ss Score
8.69
Exon sequences
Seq C1 exon
CTGGAGAGCTCCATCCAGAGCAGCATGAAGCCGGAGATGGCGCGGCTGCGGCAGACGGCGGTGCAGAACCACACGGCCACCATGCTGGAGATCGGCAGCTCCCTGCTGAACCGCAGCGCTGAGCAGAGCCGCAAGCTCACCGACGTGGAGGCGCAG
Seq A exon
GTGGGCGGCGATGGCACGCGTGTCCCCACGTCCCCACTGCCACCAGAACTGCAGCGCGGGGCAGTTCCTCTGCTGCACAACGCGGGGTGCTGCCCTGAGGGGGTGCTGCTTTCGTGTAGTCACGTTCCTGGGGACAATGGGGACACGGAGGGGCTCTGCTGTGTGTGCCCACGCTCCCAACGTCCCCGTGCAG
Seq C2 exon
GTGCTGAACCAGACGTCACGCATCGAGATGCAGCTGCTGGAGAACTCCCTGTCCACCACCAAGCTGGAGAAGCAGCTGCTGGTGCAGACAAACGAGATCCACCAGCTGCAGAGCAGGAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026890:ENSGALT00000045797:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.519 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF032458=Phage_lysis=PU(36.1=73.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCCAGAGCAGCATGAAGC
R:
ATCTCGTTTGTCTGCACCAGC
Band lengths:
244-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]