BtaINT0017841 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021811 | ANGPTL4
Description
Bos taurus angiopoietin 4 (ANGPT4), mRNA. [Source:RefSeq mRNA;Acc:NM_001076483]
Coordinates
chr13:60753894-60755697:+
Coord C1 exon
chr13:60753894-60754049
Coord A exon
chr13:60754050-60755575
Coord C2 exon
chr13:60755576-60755697
Length
1526 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTA
5' ss Score
7.64
3' ss Seq
CACCTCCCTTGTCGGGGCAGGTT
3' ss Score
8.58
Exon sequences
Seq C1 exon
CTGGAAAGGTACATCCAGATGAACCTGAGGTTGGAGCTGGCACAGGCCCAGCAGCACATGGTCCAGAACCAGACAGCCACCATGCTGGAGCTGGGCACCAGTCTCCTGACCCAGACCACCGCCCAGACCCGCAAGCTGACCGACGTGGAGGCTCAG
Seq A exon
GTACTAGAGGGTGAGGGGGTGGTACTGGGGGCACCGTGGTTGGCCAGGCTGGCTCATAACCCTGGTCATCTTGCTTTGACCCTTGTCCCTGGGGAAGGTCAGAGCCTCCTCTGACCTTGCAGCCCCCGGGACCCCTCCCTGATGACCCCATCACAGAACTGTCTCCCACCAGGCCACGAGCCCAGAGCAGGAAGTGGGGGACAGCAGACACTGGGTTTGGCTCTTCTGCCTCTGTGAGTCCCGTGTCCGGTCCGAGCTGGGATTCAGCAGCACAAACACACCTGCCCTCAGGGGGCTCACAACGCTTCAGGAAAATGTGGATAATAAATTAGACTTATTTATTAGACCTCAGGGGGACAACAACTCTGGAAGAGGAGGCCACAGGGAGCAGCAGAGAGGGAGGTAGGAAAGGGACAGGAATATAAGTGAGAGAGTGAGTAAATGAATGGCTGAAAAGACAGCTGACAAAGGGCCACGTGTTTCTTAAACCTTACTATGTGCCAAGCCCTGTTGGAGATGCCTGGTTCTAGTTTACAGCAGTAAATAAAATAGGTATGCATCCATACGCCCCTGGAGCTTCCTTCTCATGAGCACCAAGAAAACAAGCAGGATAAATAGCATGTGTATGAGACAGTGATAGTGCTAGGGAGACAACAGCAAGCACGAAATGACCGGTGGAGAGTGTGTGCCAGGAGTGGCGAGAGGGACAAGTTGCAAGCTTAGACAATACAGCCAGGAAGGCACTGCTGGGAAGGTAGGGTTGGGGCCAGGCTTACTAGAACAGCCTTCCCAACAGGGAGAGCAGTATGTGCAAAGGCCTGGAGGTGGAACAGAGCTGGCAAGCTCCAGGAACATCAAGGAGGCCAGTATGGCTGGAATGACCCAGGGAGACTTGTGGGCCAGCATCAGAGGTGATGGGGACAGGTGGCATTACAGGATTTTGCCAGCCACCGCCATGTGCGGTGGGAGCCACAGGAGGATTTTGAGCAGAGGGTCCGCATTTTAAAAGTCTACCCCAGACTACCAACCAAACAGAGGCCTATAGAGGACAAGGTCGGGGACAGGGAGCCCTGTGAAGAGGCCAGTACAAGACACAGGGTGAGAGATGGAGGTCAGGGCCAAGCGGGTCATAGAGGAGACCAGGAGAGTGGCCATGTAGCCATTCGGGAGGTGGAGCAAATATCTAACTGCTGATGGATTAGATATTGGGGGGGAGGTCAAGGCTGATTCCTCCCACATACATGGCAGGAGGAATGGAACTCCATGTACAGGGATGGGGAAGAGCAAATTTAAGATAATCACAAGCCTAGCTAGGTGTCATGGTCTGTGCACGGGTTGGGAAAGAATTTCCAGAAACAAGGCAGAAGGAAAGAAAGGACCACGATATTAGGGTCTATGAGTGAGAGGGTGTAAATAGGTCAGCAAGTCTCTGGAATGGCAGGGCTTGAGGTCAAGTGTGTGGCTGCTGGGCAGGGCTCCTAAAGGGCTTACAAAGCCCCCTCTCCCCACCTCCCTTGTCGGGGCAG
Seq C2 exon
GTTCTGAACCAGACGTCACGAATGGAGATCCAGCTGCTGGAGACCTCACTGTCCACCAACAAGCTGGAGAAACAGCTGCTGCTGCAGGGCCATGAGCTCCACCGGCTGCAGGGCCACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021811:ENSBTAT00000029073:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.481 A=NA C2=0.049
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACATCCAGATGAACCTGAGG
R:
CTGTTGTGGCCCTGCAGC
Band lengths:
271-1797
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development