MmuINT0015009 @ mm10
Intron Retention
Gene
ENSMUSG00000027460 | Angpt4
Description
angiopoietin 4 [Source:MGI Symbol;Acc:MGI:1336887]
Coordinates
chr2:151925387-151927185:+
Coord C1 exon
chr2:151925387-151925542
Coord A exon
chr2:151925543-151927063
Coord C2 exon
chr2:151927064-151927185
Length
1521 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
CCTCCTGCTTATTGGGACAGGTC
3' ss Score
7.46
Exon sequences
Seq C1 exon
CTGGAGCAGTCCATCAAGGTGAACTTGAGGTCACACCTGGTGCAGGCCCAGCAGGACACAATCCAGAACCAGACAACTACCATGCTGGCACTGGGTGCCAACCTCATGAACCAGACCAAAGCTCAGACCCACAAGCTGACTGCTGTGGAGGCACAG
Seq A exon
GTAACAGGAGAGCCATCAGAAGGCCAGGCTGATCCCCCAGGCTTCCCATCTTTTCCTGTCACTGTCCTGGTGAGGTCGGGGCACTGGGCAGAGGCATCACTGACAAAGCCCCTGCCCCAGGGGTTAGAGTGCACTGGGAGAACTGGGTGATAAAGAGACCATCCAAGCAGCAGGCCAAGCAGGGCAGCCAAGAGGGAGAGCAGGAGTGGGGGACAAGGAAGGAACAATCCCTCCTGTGTGCCAGACACTCTGCCAAACCCTGGCTCCAGTTCAGTGCAGTAAGCAAATCAATCAAGGTACCCTATTGCCCTGGAACTCACCAAGAAGGCAAGCAGGACACACAACCCCTGTATGTTACTCAGTGACCATGCCAGGGACCTGGCACTCAGAGAGAAAGAAGGGTATGTTGCTGGGTCCACGGGCAGAATGGGAGGCAATGAGTCCAGACAGCAGGGTCAAAAGGACACTGGGACACAGTGTTACTAGGACATGAGCCAAGTTGCTAGGAAGAGCACACCAGACAGGGAAAGCAGCATGTATAAACGCTCGGAGGTGGGGGCAGGGGGAGGTCGAGCCTCCTGGCTTCTCCAAGGACATGGAAGTGCAGGGAGATAGTAGAGAGAAACTGAGTCATGGGCCTAGTGAGGATCAGCTTTCCACATATGGGTTTTGTGCAAAGAGAGAATAAAGGGGCCACAGCATAAAAGGCTGCCTCCCTCAGACTGCTGCTATAGGAAAGGGATGAAGTGCATAAGGCAGAAACAGGGAGCCCTGTGAGGCCAGCAGGACACTAGAGTCAGCAGACAGTGAAGCTAGTTGGCATTCTGTTACTGTGATAAATGCCATGATTAAAGGAAATCTAGGGAGGTGAAGGTTGTTTTTTGTTTTTTGTTTTTTTTTTTAACTTATCCGTTCAAGTAACAGTCCATCGCTAAAGGAAGTCAAGGCAGGCACTCAAGCAGGAACAGAGGCAGGAGCCACGGAGGAATGCTGCACACTGGCTTGCTCTCCATGGCTTGCTCACTTTGCTTTCTTATATAACTCAGGACCAGGAGTAGCATCACTTGCGGAGGGCTAAGCCCTCCCGTATCAACAACCAAGAAAATGCCCCACAGACATACCCACAGGTCAATCTTATAGAAACATTCTCCTAACTGGGACTCTCTCAGATAACTCTGGGCTGTCAAGTTGACAGCTGAAGCTAGCTAGGAGGGGCCCAGATTCCATATGGCCTTGGAGGGAAGGGACTGTTAGGGGTCATTTGGAAGATAGGGCTGATGGATTGTATGTGAGGTCTGCACCCCAACAGCCAAAAGATTAATACTGATGTGCAAATGTGGTAGTGAGGAAGGACAAATTAGAAGCCAGCTAAGTCATGTAGGGCCTATGAAAGATAGTAAGCTAATAACCATGGAAACTAATAGCTTTAGACCATGGCAATTGATTGGCAAGTTTCAAGAGTGGCAGACCCTTGGGTGTACATAGCACACATCCCCACAAACCTCCTGCTTATTGGGACAG
Seq C2 exon
GTCCTAAACCAGACATTGCACATGAAGACCCAAATGCTGGAGAACTCACTGTCCACCAACAAGCTGGAGCGGCAGATGCTGATGCAGAGCCGAGAGCTGCAGCGGCTGCAGGGTCGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027460:ENSMUST00000028955:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.423 A=NA C2=0.659
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCAGTCCATCAAGGTGAA
R:
CTGTTGCGACCCTGCAGC
Band lengths:
276-1797
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types