HsaINT0007984 @ hg19
Intron Retention
Gene
ENSG00000101280 | ANGPT4
Description
angiopoietin 4 [Source:HGNC Symbol;Acc:487]
Coordinates
chr20:868961-871011:-
Coord C1 exon
chr20:870856-871011
Coord A exon
chr20:869083-870855
Coord C2 exon
chr20:868961-869082
Length
1773 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
GCTTCTGCTTGCTGGGGCAGCTC
3' ss Score
5.61
Exon sequences
Seq C1 exon
CTAGAGAGGGCCATCAAGACGATCTTGAGGTCGAAGCTGGAGCAGGTCCAGCAGCAAATGGCCCAGAATCAGACGGCCCCCATGCTAGAGCTGGGCACCAGCCTCCTGAACCAGACCACTGCCCAGATCCGCAAGCTGACCGACATGGAGGCTCAG
Seq A exon
GTAACAGAGGGTGACTGAGTGGGCACTGAGGGCCTGTGGCTGGCCAGGCTGGTTCGTAGCCCCAGTCATCTTACCTTGATCTCTGACCCTGAGTAGGGTCAAGGCCTCCTCTGGGCCTGTAGCCCCCCGGGTCCCTCCTCCCTGATGAACTTGTCATAAAACTATCTCTCTCCAAGCTATGAGCCCTGGGGGGTGGATGCTGGGCTTGGCTTTTCTGCCTCTGTAACTTCAGTGCCTGGGTCTGTGCTGGGCACTGGAATGAGGGGTATAGTAGCACAGCTCCCTTGCCCTCAGAGGACTTACAATGTGCCAGGGGAAGATGGATAAGAAACAATTCACTGGGCCTCTGGGGCCAAGGACTTGGAGAGAAGAGGTATCTGAGCAGCAAAGAGCAGGGAAGGAACTAGTGAATAAATGAAGGGTAGGGAAGTCAGTGGATGAAAAAGTGAATAACAAATAGACACAAGTTTGTGCCCATTTGTTTGTTTGATCCCCCGTGTGCCAGGCACTGCTTGAGAAGACTGGTGTCTAGTATACAGCAGGAAACAAAGCAGGCATACATTCCTACTCCTGTGAAGCTTCCCCTGAAAATGAAAAGATAAGTGACATATATGGTTATGCACTGCTTAATGTTCCAGTCAACAACTTGCCACATAGACAACAGCAGTCCCATAAGAGTATCGTATGCTGTTTTTATTGTACCTTTTCTGTGTTTAGATATGCATACACAAATACTTCCCACTGTGTTATAACTGCCTACAGTATTGGGTGCAGTCACATGCTGTATGGATTTGTAGCTTAGGAGCAATAGGCTGTCTCATATAGCCTAGGTATGCAGGCGGCTATACCATCTAGATTTGTGTAAGTACACACTATGATGTTTGCACAATGACGAAATTGCATGATGACGACTTTCTTACAACATCTTTCCGTCATTAAGCAACACATGTCTGCATATGTTAGCCAGTGACAGCGCTAAGGAGAAAATAGCATGGAAGAGAGAGCAAGAGAGGGGGTGCATTGGGAGTGGTGGGGGGGGATGAGAGCTGCAAGCTCATACAGCAAGGCCAGGAAGGGCCATGGAGAAGGTAGGGCTGCAGCCAGGCTTACTGCAGAGAGTGCTCCAGACAAGGGATGCAGCATGTGCAAAGGCCCGGAGGGAGGATGGACGTGCTGGCAGGTTCAAGAACATCAGGAGACCACTATGCTGGAGTGACCAGGAGGAGAGTGGCAGGCAAGGAGCTGGAGAAGTGATAGGGACAGATCACACCATAGGGCCTTGCAGGCCATGGTGAGAACTGGGGCATTTCCGCTACATGAGATGGGAGCCACAGGAAGCTTTTGAACAGAGCAAACATGTTTTAAGAGGCAGCCCCAGGCTACTGAGTAGAGAATAGATTGCAAGCAATGAGGGAGCAGTCCAGGGCCAGAGTGAGGGCCACAGAGCAGGAGAGAGGTGGTCAGGGGCCACCTGGAAGGCAAGGCTGACAGGACCTGCAGATGAGTTGGATGTGGGGGACAGGGTTGACAGCTCCTGGGGCCTAAGCATCAGGGAGAATGGAGCTGCCATTGCAGTGATGGAGAAAGGCAAATTTAGGAAGCAGGTAATAAGCTTAAGTCAGGGCCTGTGAGTGAGTAACCACAGGAACTACGACTGGGAGAGTGGAAATGGGTAAGTTTCTGGAGTGGCAGGGCCTGTGGGCAGGTGGGTGGTTGGGCAGGGCTCCTGTAGCGCTTACGCAGCCCCCTACCTGCTTCTGCTTGCTGGGGCAG
Seq C2 exon
CTCCTGAACCAGACATCAAGAATGGATGCCCAGATGCCAGAGACCTTTCTGTCCACCAACAAGCTGGAGAACCAGCTGCTGCTACAGAGGCAGAAGCTCCAGCAGCTTCAGGGCCAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000101280-ANGPT4:NM_015985:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.423 A=NA C2=0.390
Domain overlap (PFAM):
C1:
PF119693=DcpS_C=PD(37.1=50.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGAGAGGGCCATCAAGACGA
R:
CTGTTTTGGCCCTGAAGCTGC
Band lengths:
278-2051
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)