RnoINT0017306 @ rn6
Intron Retention
Gene
ENSRNOG00000005008 | Angpt4
Description
angiopoietin 4 [Source:RGD Symbol;Acc:1307539]
Coordinates
chr3:147436061-147437942:+
Coord C1 exon
chr3:147436061-147436216
Coord A exon
chr3:147436217-147437820
Coord C2 exon
chr3:147437821-147437942
Length
1604 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
TCTCCTGCTTATCGGGACAGGTC
3' ss Score
8.55
Exon sequences
Seq C1 exon
CTGGAGCAGTCCATCCAGATGAACTTGAGGTCAGACCTGGCTCAGGCCCAACAGCACACAATCCAGAACCAGACGACCACCATGCTGGCACTGGGCGCCAACCTCATGAACCAGACCATGGCTCAGACCCACAAGCTGACTGCTGTGGAGGCACAG
Seq A exon
GTAACAGGAGAGCCATTAGAAGCCCAGGCTGACCCTCCAGGCTTCCCATCTTTTCCTGTCCCTGTACTGGTGAGGTCAGGGCCTGAAGCCCCCTGGCTTCCTCCCCTCATGATGCCTTCACATAACCAGTCAACTCCCTCTACACTGCTACGCTGGCTCTGACTCCTTTGTGTAAGCTCAATGCCAAGACTGTGCTGGGCACTAAGCAAAGGCAGCATTGACAAAGATTAGAGTACACTGGGAGATCTGGATGATAAAGAAGCTGTGTGACCTCAGCAGGACAAGCAGGGCAGCCAAGAGGGAAAGAGGGAACGTGGACAAGGAAGGAACAATCCCTCCTGCATGCCAGACACTGTGCCAGACCCTAGTTCCAGTTTAATGCAGCAAGCAAATCAATCAAAGTATCCCATTGCCATGGAACTCACCAAGAGGGCAAGTGGGACTCACAGCCCCTGTATGTTACTCCGTGACCATGCCAGGGGACTGGCATGCAGAAAGAAGGGTATGCTGTTGGGTCCATGGGTAGAATGGGAGACGATGAGTCCAGACGGCAAGGTCAGAAGGACACTGGGATACAGTGTAGCTAGGATATAAGCCAAGTTCCTGGGAAGAACACACCAGACAGGGAGAGCGGCATGCATAACAGCTTGGGGGCTGGGGGTGTGGAGGGGGGAGGAGGGAGGTCGAGCCTGCTGGCTACTCCAAGAACTTGGAGGGCCAGTGCCCCCAGGGCAGGGAGGTAGTAGAGAGAAACTGAGTCATGGGCCTAGTGAGGATCGGCTTCCCACAGACAGATTTTGAACAAAGGGGGTATAAAGGGGCCACAGCATGAAAGACTGCCTCAGACTACTGCCGTAGGAAAGGAATGAAGAGCATAAGCCCTGTGAGGCCAGCGCAGGACACTGGACAACAGTCAGCAGAGAGTGAAGCTAGATGGCTTTCTGCTACTGTGATAAATGCTATGACTTTAAAAGAAATCTAGGGAGGCAAGGGTTTATTTAACTTATATGTCCAGGTGACAGTCCATCACTGAAGGAAGTCAAAGGCAGGCACTCAGCAGGACCAGAGGCAGGAGCCACGAAGGAACGCTGCACACTGGCTTGCTTTCCCTGGCTTGCTCAGTTTGCTTTCTTATGCAACTCTGGACCACTCACCCAGGCCAGCATCACTCATGTCAACAGCAATCAAGAAAATGCCCCCCAGACATACCCACGGGCCAGTCTTATGGAAACCTTCTCCTAACCGGGACTCCCTCAGATAACTCTGGGCTGTCAAGTTGGCAGCTGAAGCTCCCTAGGAGAGGCCAAGAGTCCATATGGCCTTGGAGGGAAGGGATTCGTTAGGGGCCATTTGGAAGTGATGGATTCTATGTGGGGTCAAGTTTATGCCTCTGGAACCCCAACAGCTAAGAGATTGGCACTGATGTGCAAATGCGATAGTGAGGAAGGACAAATTAGAACCCGGTAAGTCAGGTAGGGCCTCTGAATGGCAGTAAGCTAGTAACCATGGAAACTAATAGCTTCAGACCACAGCAAGAGATTGGCAGGCTTCAAGAGTGGCGCACATAGCACACATCCCCACAAATCTCCTGCTTATCGGGACAG
Seq C2 exon
GTCCTAAACCACACATCTCGCGTGAAGACCCAAATGCTGGAGAGCTCACTGTCCACCAACAAGCTGGAGAGGCAGATGCTGATGCAGAGCCGCGAGCTGCAGCGGCTGCAGGGCCGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005008:ENSRNOT00000006786:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.615 A=NA C2=0.707
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCAGTCCATCCAGATGAAC
R:
CTCGCGGCTCTGCATCAG
Band lengths:
250-1854
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]