RnoINT0028217 @ rn6
Intron Retention
Gene
ENSRNOG00000004518 | Cacnb1
Description
calcium voltage-gated channel auxiliary subunit beta 1 [Source:RGD Symbol;Acc:68382]
Coordinates
chr10:85971868-85974644:-
Coord C1 exon
chr10:85974498-85974644
Coord A exon
chr10:85971955-85974497
Coord C2 exon
chr10:85971868-85971954
Length
2543 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TTCCTTCCCCACCTCTCCAGGGC
3' ss Score
9.9
Exon sequences
Seq C1 exon
TCTCCCATGCGCTGAGGGCCCCCGGCTGTGCCGGGAGGGCGGCCGGACCGGAGGATCCTCTCCATGGTCCAGAAGAGCGGCATGTCCCGGGGCCCTTACCCACCTTCCCAAGAGATCCCTATGGAGGTCTTCGACCCCAGCCCACAG
Seq A exon
GTGAGACGAGGTGCCAGGCTCGAGGGAAAGGACCGCTCCTGGGGTCGGCTCGGAAAATCCCGGGAAGGAAAGGGTTATATGCCCCGCGTAGATGGGAGAGGGACGTCTGCGCGACCCCCCATTCCCGAGGGTTAATGATCGATGGACTGTTGGCCCGAGTCGGGCTGCGGTGCTGCGGAGCGAGCGGAGGCGGGTGGAATGCCTGTCAACCTCGCCTCCAGGTCTCCCCCGCGTCCAGGTCCCTGCTGCTGGGGTACCGGCTCCAGCAGGCTGACAGCGGGGATGCTGATGGGGGTTGGGGGGAATCCAGGCCTTGAGAAGCGGAGTTGGAGGGAGCCTGGAGAGCGAATCAGGCGAGGGGGGCGACGCAGAGCACGTTTAGGGGCGCTAGTGGGTGTGGGTGGGGCGGGGGTAGTACTGGGAAAAGGCAGAGACGATGGTCAGAGGGCGTTGCCAACAGGCCTTCGAAGGCTCAGGCGTTGGCTTTCTAAGGTGGGAAAGGGATCAGCTCTGGGTGGCCTTCCCCTAGTCACCTGGTCTCCATCTCTCCCTTGGATGTTTCCCTACTCCCAACACCCACATTAACTTACCCCTCCCCTTACCCCAAGGGGTGGGAGCCTCCAAAGTTTGGAAAGTTGGATGGGTGCCAACTCACTGTGTTGGAGTGGAGGACGCTGTTTTACCTGGGGGAGGGGCGCTGCCTTCTGGCACACTCACTTTCCTATGTGCTTCGGTTACCCCTAGGTAGGGGCATTCTTGGGCATACAAGGTCCCCATAGAATGACCAGCAGGGTATGTGGTAGCCATGCCAGGGGATTTCTCTAGGACTTGTCCTTCTCCAAGGATAGCATTAACCCTTGCATTGCTGTGGCCAGCCTGGAGCAACTGTAAGCAACATGATGTGGTTGATGGGTGTGTATGGGGGGTCAGGTCAGACCTAAAAATACTTTGTTTCTCCACCCCAGGCCCCTTGGAGCCTGGGAGGCAGCTGACTGATGCCTTCCTTTCAGCTGTCCCCTGTCCCTCTGAAGGCCACTCCCTTTGCCCAGTTGGGGTGGGGTAGTGGTGTGAAAGAGTCTGAGGTTGTTCACTGAAGAATCCTCTTAGGTCTGTGGAGAGCATCAACACTAGTTTAGCTGTATGTCTAGTTTCAAAGAAGGAAAGAGGACCATAGAATGTTCAGTCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATAGGATCTTATATAGTTCGGGCTGGCCTTGAACTTCTGATCCTCCTGCCTCTACCTCCAAAGAGTAGAAAATTACAGGTGTGAGTCACTATGTCACTAATCGGCTTCCTTGTTACCAGGTCTTAGGAGTCAGAGCCTACAGTGTGGTTGAGGTGCCCCTAGGTTCTTTGGTCTAAAAAAGTCTGGGATAGAGGCTGGGGGCAGGAGCTTTTGGGCATTCTGCCCATTCTGTACTGGGCAAGGGCCAAGAACATGAGCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAAGGAGAGAGACAGAGACAGAGAGAGATGCTCAATAACTTTGGCGTGTGAGAGGTCAGACAGGATCCCCCCACCCCAGCTAGAGCCCACTAAGAGAGAGTAACCATCTTACCTGGTACTGGCAGAACTATATGTCCTAGTCTCAATTTGAGGTGGGGCCTAAGGGCCTTTGAGATTGATGGAGCAGGGTTAGTACCATGGGGATGGGGCATGGGCAGTAGCAGCTGGCGTGGGAGTAGAGTGGATCCTGCCTTTGGGAGGAATATAAAAACTGATTGCCAGGATGGAGGTTGAGAGAAAGTTCTGCTAGGGTGGAGGTGAGAGTGGGAAGCTGAACAATCTCCCCAGGCACCAGGCCACAGGTTGGATGTTTACTTCTCAGAGACTCCCTCTTTTCCTTCCTCAGAAACATGACTTTGGGTCTTCAAGAGCAGAATGCCTTTCCCTCCCCACTCTGGGCTCGGGAGAAACCAAGCCTGGCCCTGGGTTGCCTTTTCTCCTCTCTCTGGGGGCATAGCACACTCTGCCCCCTCAGCTCCAGATGCAGGGGAGAGGACGTCCCCCTCTCTTCCTCTGCCCCCCAGCGCTGCAGGCAGCCTCTCCCTTCCCCCCGAGGCTGCCGCAGCCCTGCCCAGCATCTTAATTAGCTTTGCTGCCTAACGAGCCTTCTATTCCTCGGGCTTTCTGCTTCCCAGCCTTCCACTTGATTCGGGGATTCCTGGGTGTGCATCTCAGGCTCTCTTGCACGGTTCCTCATGGTGGCTGTTGTCTGGGCACTGTCCGTGAGGTGGAAGACCCTCTTTTCTTTCAGACTGGTTACCTCTAGGAGGAGAAGCTGAAGTGGGGGTGGGGCAGAGCGGAGAGTCCCCAGCTAGGCTGACCGTATACAGCCCCAGCCCCGGCAGGAGGTGGACTGGGAAGGCAGGCGTCTTTCTGATTCCACTCTTGTTCCTTCCCCACCTCTCCAG
Seq C2 exon
GGCAAATACAGCAAGAGGAAAGGGCGGTTCAAAAGGTCAGATGGGAGCACCTCCTCAGATACCACATCCAACAGCTTTGTCCGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004518:ENSRNOT00000006098:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]