RnoINT0028222 @ rn6
Intron Retention
Gene
ENSRNOG00000004518 | Cacnb1
Description
calcium voltage-gated channel auxiliary subunit beta 1 [Source:RGD Symbol;Acc:68382]
Coordinates
chr10:85968838-85971954:-
Coord C1 exon
chr10:85971868-85971954
Coord A exon
chr10:85968958-85971867
Coord C2 exon
chr10:85968838-85968957
Length
2910 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
CTGGTCCTCTCTGCTTTCAGGGC
3' ss Score
12.02
Exon sequences
Seq C1 exon
GGCAAATACAGCAAGAGGAAAGGGCGGTTCAAAAGGTCAGATGGGAGCACCTCCTCAGATACCACATCCAACAGCTTTGTCCGTCAG
Seq A exon
GTAACAGGGAAGAGGGCTTGGGAGATGCAGCTGACTGGTGCAGACTGCCTTTCGACGTTCTCGCGGGGCACCTTTTCTCACGTCACTTGTCACCTGCCTGGAACTACCACACCCGACGCCCCGTGACCTCTCTGCACCCACTGCTTCCGCCCCTCCAGCACCAGCTCCCAGCCCCTGCTGCCTGCCTGCCTGCCTGCCTGCGTCATCTCATTCAGGGACAGCCTGGCCTGCCTCCTCCTGGCTTGCTTCGGGCTGTCACCCACTCCCCCTGCCGGCTGTGTGCTTCCATGTCCTCCCCCAGAATCTGTGGTGGGGTGGGGCTGAGGCAGGTGCATGGAAATAAGCTGAGATACCGGGCTCTAGTCAGGAATGGGTCAGGAACATACTCTCTCCACTCCAAACGTCACTCTTGTAAATATGCAGAGAGAGAGAGAGCAACGTGTGGGATAAGGGGTGTTTTATTTTACAGGGATGTAGCCTGTATCCCTAGCTGGAGTTGGTGTTGACAGTAGTTCTCTGGGCCCTCATGCTGAGCTGGGAAAACTGCCACTTTCCTCTCTTCCCTCAACCCCAGGCCATCTTAGGCTGGGGAGAGGCAGTGAGGAGGCATGTGGTTGCTATGACGACTGAGCATCTCAACAAAGCCTGGTACCCGGAAAAGGCAAGGGGGGCTCGGGATCAGACAAGGAAAGGCGTGTGGTGAGAGGGCAGAGGACACTTGGTAGGAGGAGCCCCCTGGGGTAAGAGCCCCACTGGGTCCACAAAGAAGTAGTAGTAGTAGCAGGCAGATCGGGCAGACCCATCGCTGACTGAACTGAGTACTTTATTTTGAGTTCCTCTGCCTCTGGGTTTTCATGTGTGAGCTCGGGCCTAGCTCCAGAGACCCAAGGGAGGTTTTGATCTGAGTGTGTCTAAAATACACAAACAGATCCAAGGTTCTTTCCGTAGTAATCATTCCTTTAGCCCTCCTGTTCCAGAACTGGCCAGTGCCAGGTCTAGAAACAGTGACACCATGCTTTTGTTGTTAAGACAGGAAGAGCCTTCAGCTTCCCCTTGCCAGCCAAGGGGTTAGACCCCCACAGACTCCCATTCTTCTTCTCTTAGCTTCCCAAGTCCTACTCCCAGTAGGTGGCAGGAGTGGGGGGCAGACCTTGCCACATCTCTGAGCTAAATATACCCTAGCAGTTTGCACATGTAGCAATTCTGCTTGTAACCTGAGCTCCTGGGGGAACGGGCTGTGTGGGCCACCCCTAGGCCGGCAGGGCTGGGCACTGAGGGCGCCGGGATGGAGGTGCCCAGCCGGACCCTGGTAGTGGTGAGCTGGGCATGGGGCAGGTGGTGGGTGGGTGGAAGAATCCCTCAAACTGCTGTCGAGGGCCTTTCTGCAGCCCATCTCTTTGCTCCTTTACTCTGCCTGTCTCCCATTTCTGGCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTGTGTGTGTCTGTGTGTGTGTGTGTGTGTCTGTGTGTGTGTATGCATATGCATATGGGAGTCTGCTGGGGTCAGTGGCTGCCTCTCTGTCCATCTCTACTTGTCTCTGGGCACCTGTCTGGCATCTGTATTCTTGTTTTGGGGGACTGTGTAACAAGGGAGAATGGGGGTCTTTTGCTTCTCCCCCTGGTTCTGGGTCTCTCCAGGTTTAATTAGTCACCCAAATGTCTAGCCTACCCTTCCTCAAGTGAACTCCCATTCTAGGATTTTCCCTGGGAACGTAATGCTTGTCTCACCTGATGACTTAGGGAGAGGTAGGTCTTCGCCTCCACTCTCCCAATACAAACCAATGGACAATCCCGGCCAAGTGACTTTTTCCTGCCCTCAGGAGAAATCCCTCACATACCTGTAACTCCATGTCTTCTCTGTATTCCCTCCTAGACTTGTCTGCCGCCCACCCCCTCCCGAAGTCACACCAAATCCATGCATCCTGTCCTCCGCCACCCTTTGTCTCCCACACTCAGGGACACAGACCTCTGGGACGCCCTTAGTGTCTCAATTGTTCACACCCAGCACACACTCTGGAAGCCACATTCTCGAGCATACTTTTTTGTATCCCGAAATATACACACGTCTGCGCATTCGTGAGCAGTGCCGTGACATCTGTATGGCTTCCATGTGTCTCATCTGATAGATGTGTTGCTACCGGAGTCCTTGGCACTCTGGGACGGTGACTGTAGTCCGCCTTGGGTTCCTGTCACACTCACTCTTCACAACGGGACTTTCTGCCATCTAGCAGCCTAGTGTCAGGGCAGGGACCTATCTTCCACTCTCCCTCACACCTCCTGCTGCTCTGCCCTGAAAATCATAAGGCAGCTTGGCCCTATTCACAAATTCCCAGCCAGAGGAGTTGGGGAGGTGGGTGTTTTGCTCCCCTGAATCTTGATCAACAGTTTTGGTGGCCCTGTGATCCCAGTAGATGCCATGGGCAGCGGTGGGGATTCAGGCCTGAGAAGGTGGCTACAGTCCCTGCAAAGGATGGCGTTGAGTTTCTGCTATGCCTCCTCGGCCACTCAGGGGCAGGGCAGAGAAGGAGGAGCTGAGAGTTAGAGTCATCCCCTGGCACTCCTCCCTCGGGCTGTGCCCCTATCAGGTTCCCGCCCCTCCCAAGCCCCAAGCAGCTGTCATTAGACCTGCCTTAACCTCCAGCTGGCTGCTGTCACCTTTCCTAGGGTCACACTCGTCCCACAGGCTTGCAAACTTTGACCCCTGGCCTCTTTGTTCTAATAATACCTCCTTTCTTGGCCTTGTGGGATTGTGCTGGGCTGATGGGGTTTTGGATTTTTAGAATGGGTGGCATCTCCATGCCGTCCCAGGAGTCAGAAGAAGTGATGCTGGCCTTCAGCTGGTCCTCTCTGCTTTCAG
Seq C2 exon
GGCTCAGCAGAGTCCTACACGAGCCGGCCGTCAGACTCCGACGTGTCCCTGGAGGAGGACCGGGAAGCCTTAAGGAAGGAGGCAGAGCGCCAGGCCTTAGCCCAGCTCGAGAAAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004518:ENSRNOT00000006098:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.925
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF120523=VGCC_beta4Aa_N=PU(92.9=97.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]