RnoINT0028241 @ rn6
Intron Retention
Gene
ENSRNOG00000018378 | Cacnb2
Description
calcium voltage-gated channel auxiliary subunit beta 2 [Source:RGD Symbol;Acc:67385]
Coordinates
chr17:82010473-82013619:+
Coord C1 exon
chr17:82010473-82010582
Coord A exon
chr17:82010583-82013467
Coord C2 exon
chr17:82013468-82013619
Length
2885 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
CTCTGTTTAAACCTTTACAGCGG
3' ss Score
7.86
Exon sequences
Seq C1 exon
GATATCCATCACAAGAGTTACTGCTGACATCTCCCTGGCCAAACGCTCAGTATTAAACAACCCCAGTAAGCACGCAATAATAGAAAGATCCAACACAAGGTCGAGCTTAG
Seq A exon
GTAAGTCAGCCAATTCCAATGAGCTCGAGCTATTTAACTACTCCTTACCTGTCGGTGACAGTGAGCAGACCTGGCGAGAATGACTGCATGTACCTTGTAGAAAAGTCCATGTCAGCAGCTACTGTACGGTCCTAATGGTTCCATAGTATAGATTACTGAGACAGCGTAAGTCATCCCACCTGCTATCAGCACTGTGGTTTGTTTCAGTAATGCTCACTCGATATTTACATCAGTGGTCAAATCATATTCAAAACAGTATGATTTATATGCGAGACTGAGAACAGAGGAAGCCAATTCCTGTCTGTCCTGAGTTACATCAGTATTTTTATTTGTAAAAGCAGCGTGGGGACTTTGATGGACTTGTTGGGATGTGGCTGGAAATTGTCATTAACATATGGTAAGGTAAAGTTCAGACCTTCCAGCAGCTACTGTAGCTTCCTGAACCTTTGCTTGGTGTTTTAATTACTAATACATTTTTAACTAGTATATTGTTAGGTTTAGGGTCTATACATTTCTAAAAGTTGTCAGACATGTCAGATTTAGGTTCAATTAATTATTTATGTGAAATATGTAAACACTTTGGGAGGCAGGGCTTAGCAAACAAATTTTTCGGTTACTCTGAACTTTAAATATATATATATATATATATATATGAAAACTTACCTTCTGTGTCTTTGGAGGCCTGGAGGGATAGATCAATGAATAAGGGTACTTGCTGTTCTTGCAGAACTGGAATTCAGTTCCTAGTACACATTAGGCAGCTGACAGTCACTTGTAATTTAGGCTGCAAGGGATCCAACATCCTCTTTTGGCCTCTGTGGACACATGTACGCATGTCCACACACAAAATACAACGCCATTTTGTCTCCTGCCAATAAAGCAGTGATGTCTAGTGACACAAGTCTGGAAATAGATTAAGGATGTAGATGTGGTACACACACGTATAACCCCACCACACCAGAGGCTGATGCAGAGAGATTAAGTTCAAAAGTAGCCTGGAGCACACGATGACACCGATCTTACAGTCTTAGAAGAAAATGTGATCATTTTTGCTTATAGTAATCTCTTATTTATTTTGTATTTAAGAAAATTTAACTAATTCACTAACAGTGACCAACAGCAGGATTTTAAATGCCTCTTCTGTTCCATGTATTTCGCTGTACATATTGTAGTCAAGCTCTTAAATCCCTTATTTTTTGCAACTTTTTTCTTGGAAAAAAAGACTAGACAACTTATTCTGAAGGCTTCTGATGGTCCGAATTGTGCTGTGTTACACTGTTATCATTTGTGCAATTCTATTCCCTGTGTTTCTTACAAACTAGTACACTTTATCAGATGAGATATGTAGTTCAGGGTGCTATGTGACCAAATATTATTTTGTATTTAGTATATCAAATGATTAGACTGTGGTTTCTCAAAGCATCCTAGTAAAGAATTTTATGTAAACAGTTAGTGATTTGCATTTTCTAGAAGAATATGTGAGTTAAAAGGTTCTGTCATCAATACAGACAAATCAAAGAAACTGAAGCATTTTTAGGCCCCAGTTGGATGGTGTGAAAGAGTCTTGTGGGCTGGAGAGATGGCTCAGAGGTTAAGAGCACTAACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCCGATGCCCTCTTCTGGTGTGTCTGAAGATAGCTGCACTGTACTTATATAAATAAAAATAAATAAATCTTAAAAAAGAAAAAAAGAAAAGCCATGGCCTAGTGCCTGTGTGGGGGTTTTGGGGACTTGACCCTCTTGTCTTCAGTTATATCTACAAGCTACATGCTGTGCTTAACAGTTCAATACTAAATTATTAAAATTTTAAAGTTCAGCTTTCACTAAGAGTAGCTCATTTCAAGTGCTTGAGTACCCCACATGGCAGCCACCAAAGTAGGCAGTGCAGAGAACGTCCTCGTTGTCCCAGATGGTCAACCCGGTAGCCCTGCTGTGGAACCTTTGGAGCGCGGTAGCTGAACTGATGATGTCATTTCCTGCAATTCTATGTGCTACTTCTAGTGGGAAACCGCCTGTTGAAACATGAATGTTACATGACCACTTTTCATTTCTTTTGAGATTCTAATTTACTTACAATATTTCGCCCTTGGCTTTCCTCCCTCCAAACCATCACACATACCCTTCCCCACCGTTGCTTAAATTCATGGCCTCTCTCTTTACAAACTGTTATTGCATGCACATATATACACGTATGTACATATACATTCCTAGTCATATCAGAAGCTACACTTGTAAAGTCTTACCAACTTGACTGCCTAATGTGAGCTGGCCAAGGATGACATCAATGAACAGCACAAACTGGATGGAGAAAAGCCCACAGGGCCTCAACCCTACACAGACAACTACAGGCAACTGAAAAAAAACTGGCAACTGGAGAGGTGGTCCTTCCCAGGGCACAGCGTGACAACTGGTCATCCAGTACCAAATGGCCAAAATGTACATAGAATTAGCATTACATGGACTGAACAAGTTATACTAACGACCATGTCTTCATTGGTGGCAAACAAGAGAAATGCAGTTTAGGCCACGTGTCCAGTAGGCACCCTCATGTCTCTCACATCCTTGTATAACAGATGGCCCAACCCAGGTAAGCTCATGTGCAAGGAAAGGTATGCACTTGGAGCTGGAATAACGATACTGAAGTACTGAAGGTGTGAGGAAATAGTCCTTGCCAAAGGACGCCTTTCTCAGTCATGTTGACTATAATCACTAAAATGGCAGCTGTCCTGCTGTCACTCTGGATAAAGAACTAGCGTGGTACTTTATTCCAGCTTCCTGTAGATTTAAATAAGTGAACTCTGTTTAAACCTTTACAG
Seq C2 exon
CGGAAGTTCAGAGTGAAATTGAAAGGATTTTTGAACTTGCAAGAACACTGCAATTGGTAGTCCTTGACGCGGATACAATTAATCACCCAGCTCAACTCAGTAAGACCTCTCTGGCCCCTATCATAGTGTATGTAAAGATTTCTTCTCCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018378:ENSRNOT00000031542:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.202 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(20.3=100)
A:
NA
C2:
PF0062516=Guanylate_kin=FE(27.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]