MmuINT0027904 @ mm9
Intron Retention
Gene
ENSMUSG00000057914 | Cacnb2
Description
calcium channel, voltage-dependent, beta 2 subunit [Source:MGI Symbol;Acc:MGI:894644]
Coordinates
chr2:14896757-14903084:+
Coord C1 exon
chr2:14896757-14896866
Coord A exon
chr2:14896867-14902932
Coord C2 exon
chr2:14902933-14903084
Length
6066 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
CTCTGTTTAAACCTTTACAGCGG
3' ss Score
7.86
Exon sequences
Seq C1 exon
GATATCCATCACAAGAGTCACTGCTGACATCTCCCTTGCCAAACGCTCAGTATTAAACAATCCCAGTAAGCATGCAATCATAGAAAGATCCAACACAAGGTCCAGCTTAG
Seq A exon
GTAAGTCAGCCAATACTAAAGAGCTTAAGCTATTTAAATATGCCTTACAGACCAGTAACAGTGAGCAGATCTGTAGAGAATAACTGTAGGTACCATGTAGAAAAATCCATGTCAACAGCTAGTGTAGTTACTGGGATAGCTTAAGTCATCCCACCTGCTATGAGCACTGTGGTCTGTTTCACTAATGTTCACTGAATATTTATATCAGTGGTGAGATCATATTCAAAACAGAATGATTTATGTGTGAGACTAAGAACAGAGGAAGCCTGTCCCTGGCTGTCCTGAGTTACATCAGTATTTTTATTTGAATAAGCACCATGGGGACTTTGATATGTCTGTTGGGATGTGGCTAGAAATTGTTCATTAACACGCAATAAGGTCAAATTCAGACCTTTCAGCAGCTACTTCCTGAAGTATGTGCTTACTGTTTAGTTACTAGTACACTTTTAACTAGTATATTGCTAGGTTTAGGGTCTTATACATTTTTAAAAGTTGTCAGACATGTTTAGGTTCACTTAATTCTTTATGTGAAATATGTAAATCCTTTGGGAGGCAGGGCTTTAGCAAACAAGTTCTTCACTTACTCTGAACTATAATTTTATATATGCATGAATGTATGTGTGTGTGTACACACACACACACACACACATATATATATATATGAAAACTTATCTTTAATACTTCATAAAAACACTCTTTTGGAGGCCTGGATCTCAGAACTGGAATTCAGTTCCTAGTACACATTGGGCAACATCCTCTTCTGGCCTCTATGGGCACATGTACACATGTCCACACACAAAAGAAAACTGTTTTTTTTTTTTTTCTACTGCTTACTAAGCCCTGAATGATGCTTAGTGACACAAGTCTGGAAATAGATTACGAATGTAGATGTGGTACGTATACCTATAACCTCAGTATGTCAGATGCTAATGCAGAAAATTTATATGTTCAGAAGCAGCCTGGACCACACAGTGACACCCCATCTTATAGTTTTGGAGGAAAATATGATATTTTTTGCTTACTTATAGTAATCTCTTATTTATTTGGTACTTAAGGACATTGTTATAAAAAGACCATTTCATAGATTTAAGCAACTAACAAAGCCAAGCAGTTTACTTACAGTGACCAACAGGAGGATTTTAAATGCCTCTCTGCTCCATGTGTTTTGCTACACATGTACTAGCTAACAAACAACATGCAAAAGCCTGAAAGTAGAAGGATGGATTTCATAAAGCTTCTGCAGCCAGGCGTTTAACACAGCAATGAGGCAGATAGGAGCCACTGGAGTGCAGAATGAAGGCAGTGTTCTTATGGTGAACCCAGTGCCTCAGAGCTGATGCTGCAGAAGCGGTAGGACAGGGGATGCCTGAGCTATGACTTGCAGCTTGAAAGTGTGTAGAAAGGAAAGAGGTTGAGGAGGCAATGGGGTGATGATTTGAGGCAATGGCAACTCTAAGAAGCTTCTGGAAATCATGCCACTTTGGCTAAAGTGTACAGTTGAAAGGAGGGAGGTAGAGGGCATATCATAAAGAGGTAGGGTAAGGTATTAAGGAACTTGCCAAAGAGTTTATTCTTAAGGCATTAAGGAACCAACCATTGCTAGGCAGTATTATAGGTGACAGGCTCACAAAAATAAAGGACACAAAATATAGATATAAATTAATTGAAAATCGCAGATAGCTGGTCAGTGGCTCACAAGCCCAGGAGCAGAGAACAAAAAGGACACAAAATATAGATATAAATTAATTGAAAATCGCAGATAGCTGGTCAGTGGCTCACAAGCCCAGGAGCAGAGAACAACCTGAGGAGGGGATCACTGAATACAAGGAAGGCCTTTGAGAGTAAATAACATTCAAGACAGTGACACCTGTGGAATACATAGTGTTGGGGACGTTTTCAAGTTCTTCTGCAAAGCTAAAGAACTATTTGTAGCCAATAGTGTTTTATTGAATCATTCTCCATCCACAGATCATTGGAGTAAATCATAGACATATTTTACAAAGTTGATTAATTACACGTATATAAACTACTATCCAAATAGTATACAGTCCACATATTGTAATCCAGTCTCTCAAATCTCTCATTTTTCACAATTTTTTTCTTGAAAAAAAAAAAACTGGACTACTAATTCTGAAGGTTTCTGATGGTCAGAATTTTGCTGTGTTGCACTGTTATTTGTGCAATTCTATTCCCTGTGTTTCTTATAAACTAGCAAACTTTATCCGATGGAATATGTAGTATTTGTTGTAGCAAGAATGTATCAGGGTGCTCTGTGACCAAATATTGTTTTGTATTTAGTAAATCAAGTGACTAGGTTGTGGTTTTTCAAAGCAATCAAGTAAAGAATTTTATGCAAATAGTTAGTGACTTGTATTTTCCAGAATATGTGAGTTAAAATCATCTCCAAGAACATTCTGCCATTAGTACAGACAAATCAAAGAAACTGAAGCACTTTTAAGCCCCAGTTGGCTGGTGTGAGAGTCTCGTGGACTTGACTCTCTCATCTTCAGTTCTAACTATAAGCTACATGCTATGCTTTACAGTTCAATATTAAATTATTACAATTTTAAAATCCAGTCTTTTCATTTAGACTAGCTACATTTTAAGTGCTGAGTACCCTCACATGGCTAGTAGCCACCAAACTCGGCAATGCAGAGATTATTCTCATTATCTCAGATGGTCAACCTGGGAGTCTTGCTGTGGACTCTTTGGAGAGCAGATGAACTGATGTCATTTTCTGTAATTCTATGTGCTATTTCTAGTGGGAAACTTCCTGCTGAAACATGAATGTTACAAGACCACTTTAAAACAAATGTTTTTTGAGATTCAAATTTACTTATAATATTTTTCCCTTAGCTTTCCTCCCTCCAAATCATCCCACATATCCCTCCCTTCTCGTTTAAGTTCATGGCCTCTCTCTTTACAAACTGTTATTGCACTCACATCTGTATACACATAAATATTCCTAGTAATATCAGAAGCTACACTTGTAGTCTCACCAGCTTGACTACCCAATTGTGAGTTGGTCAAGGATGGCATCAATGAACAGGACAAATTGGATGGAGAAAAGTCCATGAGGCATCAACCCTACACAAACAACTACAGGCAACTGAAAAGACCTGGAAACGGAAGAGGTGGTTCTCCCCAGGGCAGAACAGGTCAACTGGTCAACCTTGAAAACATACATACAATTAGCATTGTATGTACTGAACAGGTTATACTTACGACCATGTCTTCATTGGTGGAAAGCAAGAAAAGTGCAGTTTAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATTAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTTGGCGTGACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAATCTCTGAAGAAAGAAATTAAGGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTGGAAGGAGCAATTTGCAAATTTGTCTGGAATAACAAAAAACCTAGGATAGCAAAAAGTCTTCTCAAGGATAAAAGAACTTCTGGCGGAATCACCATGCCAGACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGAGACAGACAAGTAGACCAATGAAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTTACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCGTGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTGTAAGATGGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAACTGAACAAAGAATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAGTTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGAAACTCACACAATATGTATTCACTGATAAGTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAATTTGTTAAACACATGAAACTCAAGAAGAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGATTTGGGAACAAAACACCCATGGAAGGAGTTACAGAGCCAAAGTTTGGAGCTGAGATGAAAGGATGGACCATGTAGAGACTGCCATATCCAGGGATCCACCCCATAATCAGCATCCAAACGCTGACACCATTGCATACACTAGCAAGATTTTATTGAAAGGACCCAGATGTAGCTGTCTCTTGTGAGACTATGCCGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTAATGGATGGATCATAGGGCTCCCAATGGAGGAGCTAGAGAAAGTAGCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATATATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACTTGCAAACTATATGCCCCAGTACAGGGGAACACCAGGGCCAAAAAGGGGGAGTGGGTGGGGAGGGGAGTGGGGGTGGGTGGATATGGGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGTTAAATACCTAATAAAAAATGGAAAAAAAAAAAAAAGAAAAGTGCAGTTTAGGCCAAGTTTCTAATAGGCACCCTCATGTCTCTCTCTTCATATTGTACATCTTTACATAACAGATGGCCCAACACAGGTAAGCTTATGTGCTAGGAAAGGTGGTACATTTGGTGCTGGCTGAAAGAACAAAGCCTGCAGTACTAAAGGTGTGAGGAAATAGCCCTTGTCAAAGGACATCTTTCCCCAGTCATGTTGACTATAATCAGTAAAACAGCAGCTGTCCTGCTGTCACTCTGGATAAAGAAATAGTGCGCCACTTCATTTCAGCTTCCTGTAGTTTCAAATGTGTCCTTTTAAATAAGCGAACTCTGTTTAAACCTTTACAG
Seq C2 exon
CGGAAGTTCAGAGTGAAATTGAAAGGATTTTTGAACTTGCAAGAACACTGCAATTGGTAGTCCTTGACGCGGATACAATTAATCACCCAGCTCAACTCAGTAAGACCTCTTTGGCCCCTATCATAGTGTACGTAAAGATTTCTTCTCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057914-Cacnb2:NM_023116:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.191 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(20.3=100)
A:
NA
C2:
PF0062516=Guanylate_kin=FE(27.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: