RnoINT0028970 @ rn6
Intron Retention
Gene
ENSRNOG00000026025 | Capn11
Description
calpain 11 [Source:RGD Symbol;Acc:1302946]
Coordinates
chr9:17747370-17747773:+
Coord C1 exon
chr9:17747370-17747434
Coord A exon
chr9:17747435-17747704
Coord C2 exon
chr9:17747705-17747773
Length
270 bp
Sequences
Splice sites
5' ss Seq
GACGTATCT
5' ss Score
3.26
3' ss Seq
TCCTTGACTAATCTCCCTAGAAA
3' ss Score
6.54
Exon sequences
Seq C1 exon
TCAAGAGCTTCAAGTCGAAGGGCTTTAGCTTGGATGTCTGTCGCCGTATGGTCAACCTCATGGAC
Seq A exon
GTATCTTTGTGCCCTGTGGCAAGCCTAACGGGGGTGTTTCCCATCTTCTCCCCTGACCCCTCCAAGCCTGACTCAGAAGTGGCCATCTCTTCTCCAACCTCAGTACCCTCCTGGTCATAGGGAAGGAATGGGGGGGGGGGGTAGCTCGAGATCCCAATTCTGTGTTAGCATTCAGTAACCTCAAGCCTTGCCCCTAGCCTGTGTGGAAGCCTTCTGTTTCCTCGGCCCCAGAATGCCCTCTTTAATCTTATCCTTGACTAATCTCCCTAG
Seq C2 exon
AAAGACGATTCTGGAAAGCTGGGGCTTCATGAGTTCCATATCCTATGGAAAAAGATCAAGAAATGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026025:ENSRNOT00000065754:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(35.0=100)
A:
NA
C2:
PF138331=EF-hand_8=PD(30.0=78.3),PF0003627=EF-hand_1=PU(6.9=8.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]