DreINT0041115 @ danRer10
Intron Retention
Gene
ENSDARG00000052748 | capn1b
Description
calpain 1, (mu/I) large subunit b [Source:ZFIN;Acc:ZDB-GENE-060503-491]
Coordinates
chr22:26281364-26284188:-
Coord C1 exon
chr22:26284124-26284188
Coord A exon
chr22:26281433-26284123
Coord C2 exon
chr22:26281364-26281432
Length
2691 bp
Sequences
Splice sites
5' ss Seq
GACGTATCC
5' ss Score
0.98
3' ss Seq
CCTTGATTGACTGAACTCAGAAA
3' ss Score
1.62
Exon sequences
Seq C1 exon
ACCGAGACTTAAAGACAGATGGGTTCAGTTTGGAGTCTTGTAGGTGCATGATCAACCTGATGGAC
Seq A exon
GTATCCTAACATTCTGACTTTTAAAAACGTATAAATAGCATATATACTTTCACCTTGCTAGTACCACTTTTTGCATTCAGAAGAGCATTTGGGGCACAGATTCCAGAATGTAATGGAAACATTCCTCAAAGATTTGAGTCCAAATTGCACTGACAACATAAGATTCAAATTCCAATTCTTCCAGTGAACTGTTTATACAAGACAGGTTTGCCAAGTCAAGTTAAGTATTATTGTCCGTCTTTAAGGTCACAAGGTACAGTATAGTGAATTGTTGTGTCTCACAGGACCACGGTGCTACATACTAATGAAACATTTATTCATTGATTCATTTTCTTGTCTGCTTAGTCCCTTTATTAATCCGGGGTCGCCACAGCAGAATGAACCGCCAACTTATCAAGCACAATTTTACGCAGCGGATGCCCTTCCAGCCGCAACCCCTCTCTGGGAAACATCCACACACTCATTCATACACACACTCATACACTATGGACAATTTAGTCCTCCCAATTCACCTGTACCGTCTTTGGATTGTGGGGGAAACCGGAGCACCCGGAGGAAAACCACGTGAAGGCAGGGCGAACATGCAAACTTCACTGAGCCGAGGTTCGAACTAGCAACCTTCTTGCTGTGAGTCGACAGCACTACCTACTGCGCCACTGCGTTGCCCTACTAATGAAACATAAAAAATACAAATATTTAACAGAGAAAAACTGTAAAGTAAACATTGTAAACCTATACACATCTAGGAACTCTTTTACTCAATACAGGGTTCGCACTGGTCACTGAATTTTAGAAGGTTTATTCCACTGAATGTCAGGGTTTTATTTATTTATTTATTTTGTCCAAGTCATGGAATGTTTGGGATTTTTGTTATTAATTGAAAATATTTCCAATTAATTATCAAAATGTCATTTTTTATTGTGTTTATTTATTTTAGCTTTTTACAGTCACTGACCAAACTAAAAATATGACATATGTAGACATATAGGAACCTCAGAATTTAATAGAAAATGAGGCAAATACTGTAACTGCGAAAATGTTGACTTTTTGACAAAAAAAAAAAAAAAGAAGAACTACCTCTTTTAATAGGTTGGCTACTGGCCTGATTTATGACCTTTATTTTTTGAACATGACAGTGTGTTCGTTGTACTCAAATGGCCTACACAGTTACCAATCCAATAGAGCACCTTTGGGATGTGGTGGAATAGCAGATTCGCATTATGGATGTGCAGCTGACAATGTGGGCAGCAACTGCGTGATGCTATCATGTCAATATGGACCAAAATCTCTGAGGAATATTTACCTTGTTGAATCTATGCCACGAAGGTTTAAGGCAGTTTTGAAGGCAAAAGGGGGTCCAACCTGGTACTAGTAAGAAATACCTAATAAAGTGGCCGGTGAGTTTATTTGGGTGGTGTGAGGACCCTCTTGGAATTACTGTTTACTTATTTATTTATTTATTATTATTTTTTTTTATCAAAAGTAAATTCTATTTTTGAAGTCTAAACATGCTCGAAAACTTACAAAATTATGCACACACACCAGACTTTTTTTTCTTTTTTAACATTTAATCTTGGTTTCAGAACTCTGTGGCTCAATAGCACCACCTACACACTTTCAACACTGCCCATCAGCACACATATGAAATACCTATTAAACTTGTATTTTAACATTTAATCAGATCGATACCAAATTTGAGCAGTGTAATCTCAAGGCATTTGCCGTGTTAAATTGTAAAGATCTAGATGTTTTGTCATATTTTGTTTCGAATGGGAAAAGAAGGTTCTCAGGGAGACAATGTTTGATCTCAGTTTGAACTGACAGAAGGAAGTTTGTAACATGTCAGTGTTCTTCTTATAGCTTAAATACATATTTCTCTGTCATCCTAATGCCACCAGACAATTTTGGATTTTTTGCCACACAGAAGTGTTCATTGAGGTTTAAATGATTTCAGTTGAACCACTGAAGTCACATGAAATATTTTGATAAAGTTTTTGGTTTCTCTGGGAATTCATCTGGGAAGTTGTGTTCTGAAGATTAACAAAGATCACAGGGGTTTGATATCACATGAGGGTATATACAGTTGAAGATAGAACTATTAGCCCCCCTTTGATTTTATTTTGTCTTAATTAAATATTTTCCAAATTATTTTTAACAGAGCAAGGACATTTTCACAGTATGTCTGATAATATTTTTTCTTCTAAAGAAAGTTTTATTTGTTTTATTTCGGCTAGAATAAAAGCAATTTTAAATTTAAAAAAACAACTTTTTTTCAAGTCTACAGAACAAGCCATAATTTTAAAATAACTGGACAAATTACCCTGACCTTCCAAGTTAACCTGATGAACCTAGTTAAGCCTTTGACTAGATATTTTTCAAATATAAAATATATAAAAAATTTGTTAAAAGGGGCTAATAATTTTTTACCTTAAAATGTTTTATTTTTATTTTTATTTTATTTAAATTGCTTTTATTCTAGCCGAAACAAATAAGACTTTCTCTAGAAGAAAAAATAATATCAGACATACTGTGAAAATTTCCTTGCTCTGTTAAACATCATTTAGGAAATAATTAAAAAAGAAAAAAATATTCCAAGGGGGTCTAATAATTCTGACTTCAACCATAAATATATCTTTATCATCTGATTATTAATAAGAGTTTAGTTTAGTCTCCTTGATTGACTGAACTCAG
Seq C2 exon
AAAGACGGCAGTGCACGACTGGGAATTGTGGAGTTCCAGATTCTGTGGAATAAAATCAGGAAGTGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052748:ENSDART00000105099:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(34.4=100)
A:
NA
C2:
PF138331=EF-hand_8=PD(29.5=78.3),PF0003627=EF-hand_1=PU(6.9=8.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]