RnoINT0029006 @ rn6
Intron Retention
Gene
ENSRNOG00000032375 | Capn13
Description
calpain 13 [Source:RGD Symbol;Acc:1562682]
Coordinates
chr6:24601591-24604113:-
Coord C1 exon
chr6:24604102-24604113
Coord A exon
chr6:24601794-24604101
Coord C2 exon
chr6:24601591-24601793
Length
2308 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGG
5' ss Score
10.88
3' ss Seq
AATAATCTCATTTCTTCTAGTTC
3' ss Score
7.23
Exon sequences
Seq C1 exon
GTGGATTCCCAG
Seq A exon
GTACGGCTCACTGCTGTCCTCACTGACTTCCCTCATTTCTGATGCTGCCCCTTGGTAAACCGATATACTTTTCCACATACCCAGGTCCACAAGTCCATCTTTGCTGCATCTTGAATCATCAGTCAGCTTAGCGTCTCCAAACAGGTCAACAAACTAGGATTCAGCATGGATGGTTTGGCATCTTGGTATATGGCTAGACCTCACAGAATTTTCTCGTTAACATCCAAGAGAGTCCACAGCTGTAAAAGCACCCTAACGCATTAGATCCTCATAGAGAAGCTTGGTCCAACTGGTTGCTGTATATTTAAGATGAGGGCAGTAGTAAGGGGTATCTAGGAATGACCTTCAGATGTTTGACTTAATCCCTGAATCTACCATAAGCCGACGCTTACAGGCTTCATATAGCTTCAAGGCATACCCTTACATCTGCTCATAAGCAAATAGATATCTTTTTTTAATCCAATAACCTGACCTGACCTGATCAAGTAGTGATTGGAAAGAAAATGTTGAAGCCTATAAGAAAGAATGGAAAGGGACAATGAAGTTCAGAGGGCCTGACCTCACAGGCACAGACCTGGCCTTGCCATGGCTATGAACTCTGCAGTAACTTTCCTCTCTACTGCCAAGAGGAAAATACAGTGTATGGACAAGGAACAAGATGGTGCCATCACCATCACCATCACCATCACCATCACCATCACCATCACCATCACCAGCAGATGGTAACAGTGCCCCATCCCAAGGCAGTTACAAGGCCCCAAGAAGTAGGCAGTGTCTAGCAACTCCAAGAGCAGAGGGACTCAAAAATCCAGACAGAAAGTTGGCAGCAAAGAGGTAGGTCCCTTAGTTATGGCCTAGGCACAAAGCTGGGGCTTAGAATCTGTCTGGGTCCCTTGTAGCCCCACCATAAGAAGAAAACTTAGAAGGGCTCTGAGGGAAGCTCTCAAATGAATGGAATGGTTCAGATCCAGTTCTCTGAGCTGGAGAACACAGCACAGCAGGGACCCAAGACAGAAAAGGGCACAAACTTTGCAACTAGAATAACCACCAGCTCTGTAGCTGTGTGACCCTGGATCTGCATGATGCCACCCCTCTGAGTACTGGACCAAGGTCTCCTTCCACTCCTTGGTCACACTGCTCACTGCCACTGAGCAAATCCACTCTGAGCAGAGCTTAAAAAGAAAGGTGATGGGGGTTGGAGAACAGCTGGTAAGTAGGGCCATCGAACCTAGCTTGTAGGAAGAAGGCTGTTCACATCCCTCTGCACACATTTATACTTAGTGCCAGAGGGCATAGCAGCTCTTTTGGAAGAGAACCGGGCCCCATCATCCATTACTTCTGTCAAAAGGACCTATGCACACCAGGTCCCCAAGCCCACAGGGGCTGCTCTTGAAAGGAGTAAAACTGCTTTGGGGGGTTCCACCTACCCTCTGCTGTACACCCAGGACAGTGGCCTATCCCCTGCCTAAGACTAGCTGCTATCTCCTGATAGAAGCTTCCCCATTGCCCTTGTTCTTCCCCCAAGGCAGAGCCCATCAATAACCATTTCATGCTGCATAAGCATTCTAAATGGAATCACCATGCTCACACATAGTAGGAAAATTTGTTTAGTAAGGGTTTTTATTATATAATATGTATGTGACATCTGGTAATAGGAATTGCGTTATATTTATTGTTTTATCTGTAAGAAAATTTGAAATAAAAGGGAAATGATTGAGACCCATTATTTTCCAATGAGAAGGAATCCCGGGGCTCTTGCTGGGGAGATGGGAGCAAGGGAGAGAAGAAAATTCAACCCTGCAGTTGTATGGCAGCATATGATTAAAGTTTTAGAGGAGACATAGCTTTGGGGACGCCAGAAGAAATTCAACACTGGAACAATGTCACCAGTTCCCATGTCTTGTTTGCGCATAAATAAGAGAGAAAACCAGAACCCCAGGACGCTATTAGATTAGTGAGATAAAATTACCTGTCAAATTTTCGTGCATCCACTGTAGTGTCTGGGATCTGCCGAGTTCAGCCTTCTGACATTGCAACATGATTTTGTCATATACAAATGTAGTGGGTCACACCCATAGCTGGGACTCGTGTGACCACAGACAACAGATGGGACACACCTGGTAGATAAGAAACCATTCTTTGGGGTAAGCGGTATTTTAATTTTGAATCTGAGTCAGCACCATCTCCTTTTTCCAGCTTATAATGCTGTTCCAGTGAGCAGAGAAGGGTCTAGAAAGGAATCACCTGTCCTAGCAACTAGGTCTTATGTATAGGAGAGGCTTTCTCACAATAATCTCATTTCTTCTAG
Seq C2 exon
TTCCAGAAGTTCCAGAAAAGACTGCCACCTGCATTTTTCTCCCAATTCAGAGATGCTGCCCAGGGAATAGACTATGTAACCAAACGCAACTTCACAAAGTCCTTCCACCTGAGTCCTGGGACCTATGTAGTGGTTGCCTCAGCACACGGGAAAGAAGTGGAGTTCCTGCTCCGAATATTCCTCAAAATGCCACACAAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032375:ENSRNOT00000047853:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=FE(2.2=100)
A:
NA
C2:
PF0106717=Calpain_III=FE(48.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]