RnoINT0029052 @ rn6
Intron Retention
Gene
ENSRNOG00000034015 | Capn2
Description
calpain 2 [Source:RGD Symbol;Acc:2268]
Coordinates
chr13:100900764-100901913:-
Coord C1 exon
chr13:100901830-100901913
Coord A exon
chr13:100900850-100901829
Coord C2 exon
chr13:100900764-100900849
Length
980 bp
Sequences
Splice sites
5' ss Seq
GAGGTACGG
5' ss Score
9.4
3' ss Seq
TTTTTCATTGGATCCTTCAGGTT
3' ss Score
8.67
Exon sequences
Seq C1 exon
ATCACCAGCGCTGCGGATTCTGAGGCCGTTACGTACCAGAAGTTGGTGAAAGGACATGCGTACTCCGTCACTGGAGCCGAGGAG
Seq A exon
GTACGGGCCCCTGCTAGTTGGTGGCTGTCCGGGGTGGGGCCTCCAGGGTGGCAGCTGCCTGGCGCGCGCTGCCCTCTGCTGGTCACAGCGGCGGCTGCAGGCGTTCTTCGGATCAGCTTTAAAAACAACCCCCAAACACAGCACTTCCTGTTTTATACTCTTCAAATTACGGCTCCTGGGGCGTGGTGGCTCACACCTGAAATCCTAGCCCCTGTTTCTCAAGTCCTAGGATTTTTTTTTAAAGACTTTTTTAAAATGTGTATTTTAACTTGGCTAAGTTTGCCACACAGGCTGTCTCCAAATAAGTGGCTGGGTTTTTTTCCCCCAGCCATTTACAAGTAAGCTACAGGAATGGTGGGACTGTCGTCCCAGCTACTTTGGAGTCTAGACAGGAGGGTCATTCGAGTCCGTGTGCTCAGAGGTTAGCCTGGGTAACCCAATGAAACCTTGACAAAACAAAAAACAACAGCAGAAACCCAAACCGCATCTTCCTTTCTATCCAACACCTTTAAGCAACTGAGAAAGCGCCTCTGAGAGCCTGTAACAAAAGTACAACCTATTATAGTTAACTGCGGTGTAGCTGTAACACCCCAAGCACGGACACCAGGTTGAGCTAGGCCGGTTGTGCCTCCCTCCCACTGCTGACAAAGATTAAAGGGCCCAGTCTTTAGAGCCAGCTCCTGGGAGCTTTAATTCTCATTTCCTTTGTTTTCGGGGAGGTGGTGGTATTTGTTTTGCTTTGTTTTGTTTGTGATGGAGTCTCACTGGCTTCCCTGAACCTTGGGGAGAGACCTAGGTGCTTGGGGTTTAATTCTGATTATTCCAAGGCTGGCTGGGAGTGATCTGAGCGTCAAGCCCTTTCCAGCTTCCATGATCCTCCTCCACCCACTTATCTGAAGCGGGGTGGGGAGGGTCCAACCCCCCCACCCAAGCCTGTGTGGCCCTCAGCCTCTTCAACTTTTTTTCATTGGATCCTTCAG
Seq C2 exon
GTTGAAAGCTCAGGAAGCCTGCAGAAATTGATACGTATCAGGAACCCCTGGGGACAAGTGGAGTGGACCGGGAAGTGGAATGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034015:ENSRNOT00000045326:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(9.0=100)
A:
NA
C2:
PF0064816=Peptidase_C2=FE(9.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]