RnoINT0029128 @ rn6
Intron Retention
Gene
ENSRNOG00000003468 | Capn8
Description
calpain 8 [Source:RGD Symbol;Acc:620085]
Coordinates
chr13:101013968-101016461:+
Coord C1 exon
chr13:101013968-101014051
Coord A exon
chr13:101014052-101016375
Coord C2 exon
chr13:101016376-101016461
Length
2324 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
GTGGTGTGTGGATCTTGCAGGTG
3' ss Score
8.27
Exon sequences
Seq C1 exon
GTCTCAACTGCAGCTGAAGCAGAAGCCACCACCAGGCAAAAGCTGGTTAAGGGTCATGCATACTCTGTTACTGGAGTCGAAGAG
Seq A exon
GTAGGAAGGGTTAATAGAATGACTAGGTGCATCCCAAAGATGTAGGAGGTGACACTGAGAGGTTCTGGGGTTTCCTGCTTGTCCAGGGCAAGTTTCTCTCTGGATTCAGAGTCCTGGACAGATGTGTAGTTAACTCCTGTTCGTTACAGGGTGCCCCGGCTTCTTGGAGAACAGTATCTGAGCTACTCTGGCCTCCTCTAGCAATCTGGTTTTAATGAAATTCAACTCTTTTATGAGGTGTGGTCAGAAGTGGTATAGGGACTGTCAGATTCTACACACATTGCAAATAAATGTTCACGTAGGCAAAGCAGTGTAAACCCACAGGAGTCCCTAAAAGAAGTAGCAATTTCTACTCCAGAGTTCGGGGTGAGAATTAATAATGAGAAGGCACAGAGGTGTCCCTCATCTTCTGACCCTAGCATTGCCAGGAACTATATGTGGTTTTTATTCCATATGGTTTATCTATGTCCAAATAGGATTTAAATAATTTGGTTTATGGCTAAAAGTGTAGATATAAGTGGACCATAAGACAAAAGTAAAATACATCCATCTAAATGGTACTATGACTGAGAAATGAATTTTCTTTAGGTTTTCTAATGGTCAGTACAGAAAGAGCCACACACCTGTGCCCCAGTTTGCTGTTCACTGTAACGGTGACAATATTTGCGACATATCTCTCTGCTGAGTGTGGTATTGTAAAATCAAGGCAGCTCTATAAACATGGACTGAATATTATGGGGAAACTTCAAGCTAGTTTTCATGGGAATTATGAGGATAAGGACTAATAGACTGACATCTTTATGAATGTATTAAGTGCCAGCATGTGTGCAGTGGTGACCATACTTGAGTGTTCACTAAATAGTAGGGTGAGAGAGTGTCTTAGTTCATTTTCTGTTACTGTAACACAATACCTGAGTCTAGATGATTTATTAAAAAAAGAGTTGTTTTTTTTTTTAATTTCATGCCCTTTGGAGTTTGGGAAGTCCAGTACTGGGTAGCTTCATACTACTTCCTAACAGCATCAGTTGGAAGGATAAGTGGACACAGAAGACAGAGAAACAAGGCAGGCTGAGTTTGCTTTCTATCACTCTTAGCAACTAATTCAGTCCTGAGAGAATGAAACCTCCTCACACCAGAAGAATGAACCCAGACTCTTAGGACAGACGTTAATTCCATTTGTGTTTTAATCTCTTGAAAGCTCCACCCGCAAATCCCATGACAGCAGTGATAAAACTTTACCACAGCTCTCTAAAGGCATTTATACATTTATACATTTATACTATATCCTATGCTGGGCTCCCGCCCTTTCTGTGGAGAGGTGTGAACAAACATTTGCTCACCTGGTTAAGGCACCAGTGACAGATCAGAGAAACAGTCCCACCGAGATCTACCTCAGGTGGTTATAGCAGGGTTATGTATGACTTAAGCACAGCTGCATCACCAGAAACCCACCATGGCCTGTGACACATGGGCATCCCTGGAGCTGCTTGTGTGACCTGGAGGCAGCACTCACTGTAGAACCACTGCTTGCCCTGCAACTGTTCACTACTTTTGTGACCTCAGGGAGGAGCTTTGTGAATCTTGTCACTTTCAGGAACTTCCTGGGCCTCCGTGTTTCCTTTACTCCTCAAGTCTTCTGAGTTTTCTTTAGGAGGTGATAGTTATATATATATATAGCTAACTAAGCAATTTTGAATTACTGACCTTCTCCAAGTCTCCTGTTTCTTATGCCAAACTGTGACGTTTAAATGCAACGATTGTGTATTTGAAATGCTTAGCACTGTACCTATCCCAGTAGTAAGCAATAAATAAAAGTTGGATGAGGTGGTGCTGGTAGTGGTGGTGGTGGCACATGCCTTTAATCCCAGCACTTTGGAGGCAGAGACAGGCAGATTTCTTTGAGTTCAAGGCCAGCCTGGTCGACAGAGCGAGTTCCAGGACAGCCAGGGCTACATGGAGAAACCCTACTTTGAAAAGCCATTTTCTATCTCTATCTCTGTCCACATCTACATCTATGTCATCTATATCAATATCTTTCATGCTATTGGCTTTGCTTATGGAATATTTATTAGGATGCTGTCTTTGATACCCAGAATGAGGTCCAACTTAGTCAACTGCCAAGTTTAAACCTAAGTTTAAGTAGATACATAGTTGTTTTTGTGGTGGATTCACTCTTCACTTGTTCTAATAATTTGCGATCAAGGCTTAAAAGCAAGCACGGAAGGAAACGAACGTGTGGTGTTTTAGCGACATTCGGAATGTAGACGCGCACTGCGGGCAGCAGTTGTGTGGTGACTCGCCTGTGTGGTGTGTGGATCTTGCAG
Seq C2 exon
GTGAATTTCCATGGCCGTCCAGAGAAGCTGATCAGGTTGAGGAACCCATGGGGTGAAGTGGAGTGGTCGGGAGCCTGGAGTGATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003468:ENSRNOT00000004649:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(9.0=100)
A:
NA
C2:
PF0064816=Peptidase_C2=FE(9.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]