RnoINT0036621 @ rn6
Intron Retention
Gene
ENSRNOG00000001143 | Cit
Description
citron rho-interacting serine/threonine kinase [Source:RGD Symbol;Acc:70878]
Coordinates
chr12:46352610-46353550:-
Coord C1 exon
chr12:46353381-46353550
Coord A exon
chr12:46352655-46353380
Coord C2 exon
chr12:46352610-46352654
Length
726 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
CTGTTAATGTGTCCCAATAGGCA
3' ss Score
10.41
Exon sequences
Seq C1 exon
ATGTCCCATACATACTGAAGATGGAGTCCCATCCGCATACCACCTGCTGGCCTGGGAGAACCCTCTACCTGCTGGCACCCAGCTTTCCTGACAAGCAGCGCTGGGTCACAGCCCTAGAGTCTGTCGTCGCAGGTGGGAGAGTTTCTAGGGAAAAGGCAGAGGCCGATGCT
Seq A exon
GTGAGTATGTGACCACGATGTGGGTCGGGGTTTCTCTGTAGGGTGAGTGGCTGTGGGCGCTGACCATAAGGTTGGGGCCCTGCCCGGCAGGGTCCCCACTTGCTCTGTCTGGGAGCTGATGGCCGAAGCCAAGGTCATGCCTCCCTTTGTGGTGCAGAGCAGGGGAAGCTCCAGTGTCTGCCTGGAGCAGCCTCAAAGCAGCCAAGAGTTTGTAAGGAAGCCCTCCACCCCCGTTTCCTCCCTGAGGTCCTTGAGTTCTAAGCACTTTGACTGGAAACCCGGAAGCAGACACTGTCAGTGTGCCAGTGAGCACCTGCGCTCCCAGAAGCTGCACGCAGTCTGTCCAGCTGCCTCTGCAGCATCTGCTGTCTGTAGGCAGGTCTGAAATCCCAGCTGTCCCTAAGATGTTGCAGATTCGCCGTGCTGATGGGCACGGCTCCTCCTAGACACTCCTGGGTGCAGGCTGGGCTCTTTGCTCACTGGTATTTGCCCCTCTGAAGACCAAGCAGTGCTTTTCTTTCTTTTTTTTTTTTTTTTTGGTTCATTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCCAAGCAGTGCTTTTCACATTCTTAACTGTGAGCCTCCTGAAAAACTGTCCTGTCCCACACATGAGCCTCTCTCTGAAATGTCTGTTAATGTGTCCCAATAG
Seq C2 exon
GCATGGGACTGTACTTCTTGTGAGCGTCTGCCCGTGTGGGTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001143:ENSRNOT00000041281:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(35.8=75.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCCATACATACTGAAGATGGAGT
R:
CACACGGGCAGACGCTCA
Band lengths:
207-933
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]