RnoEX0021386 @ rn6
Exon Skipping
Gene
ENSRNOG00000001143 | Cit
Description
citron rho-interacting serine/threonine kinase [Source:RGD Symbol;Acc:70878]
Coordinates
chr12:46352126-46353550:-
Coord C1 exon
chr12:46353381-46353550
Coord A exon
chr12:46352610-46352654
Coord C2 exon
chr12:46352126-46352206
Length
45 bp
Sequences
Splice sites
3' ss Seq
CTGTTAATGTGTCCCAATAGGCA
3' ss Score
10.41
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
Exon sequences
Seq C1 exon
ATGTCCCATACATACTGAAGATGGAGTCCCATCCGCATACCACCTGCTGGCCTGGGAGAACCCTCTACCTGCTGGCACCCAGCTTTCCTGACAAGCAGCGCTGGGTCACAGCCCTAGAGTCTGTCGTCGCAGGTGGGAGAGTTTCTAGGGAAAAGGCAGAGGCCGATGCT
Seq A exon
GCATGGGACTGTACTTCTTGTGAGCGTCTGCCCGTGTGGGTTGAG
Seq C2 exon
AAATTACTTGGAAACTCTCTGCTGAAGCTGGAAGGTGACGACCGGCTTGACATGAACTGTACCCTGCCCTTCAGCGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001143_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(35.8=75.4)
A:
NO
C2:
PF0078017=CNH=PU(2.2=22.2)
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCCCTAGAGTCTGTCGTC
R:
TGAAGGGCAGGGTACAGTTCA
Band lengths:
136-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]