DreEX0002789 @ danRer10
Exon Skipping
Gene
ENSDARG00000089856 | CIT
Description
citron rho-interacting serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:1985]
Coordinates
chr5:2155857-2162287:-
Coord C1 exon
chr5:2162118-2162287
Coord A exon
chr5:2158386-2158427
Coord C2 exon
chr5:2155857-2155937
Length
42 bp
Sequences
Splice sites
3' ss Seq
TTGTGTTCTGACCGCTGTAGGCC
3' ss Score
7.83
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
ATATCCCATACGTGCTGAAGCTGGAGTCTCATCCTCACACCACCTGTTGGCCTGGTCAGTCTCTGTACTTCATGGCTCCCAGTTTCCCAGATAAGCAGCGCTGGGTGGCTGTTCTGGAGTCAGTGGTTGCTGGAAGCAGAGGATCCAGAGAGAAGACCGAGTCAGACGCG
Seq A exon
GCCGGTGTTAAACGTCAGAAGACGCTCTCTCCGCTGGTTCAG
Seq C2 exon
AAGCTGCTGGGAAACTCTCTACTGAAGCTAGAGGGAGACGATCGGCTGGATATTAACTGTACTTTACCTCTGACCGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089856_MULTIEX3-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=0.143 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(35.8=75.4)
A:
NO
C2:
PF0078017=CNH=PU(2.2=22.2)
Main Inclusion Isoform:
ENSDART00000122274fB260
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCCAGATAAGCAGCGCTG
R:
CCGATCGTCTCCCTCTAGCTT
Band lengths:
133-175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]