RnoINT0036622 @ rn6
Intron Retention
Gene
ENSRNOG00000001143 | Cit
Description
citron rho-interacting serine/threonine kinase [Source:RGD Symbol;Acc:70878]
Coordinates
chr12:46352126-46352654:-
Coord C1 exon
chr12:46352610-46352654
Coord A exon
chr12:46352207-46352609
Coord C2 exon
chr12:46352126-46352206
Length
403 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
3' ss Seq
TTTCTTTCACATATGGAAAGAAA
3' ss Score
-0.15
Exon sequences
Seq C1 exon
GCATGGGACTGTACTTCTTGTGAGCGTCTGCCCGTGTGGGTTGAG
Seq A exon
GTAAAGAGAACTAGAGGCTCAGCTTGCGAGGACGCCTGCACTCTGTGTTCTTGCTGCAGCTGAGGTGGGGAAGGGGCTTCCTAACAGCTCGTTAACCCTCTGTACCCTATCTTACCATTTCCTGTCACAGAGTCGCTTTCTGTGCCTATGTCACCCACCTGTGTGTGTCCGCACAAAGCCATAACCCCAAAGCTAATTAAGGGCTGCCCAAGATAAGCCATTAACAATGACCTGGGGTTTCAGTCAAGGGATGTGGCCAGTGCCTGGGTCACGGCTCTGTGGCCGAGCACTTGGCTTGGCGTGTAAGCTTGACTTGAGGTTACTGTCCCTCTGGACAGCATGGCCATAGACAGTGTGAACTCACCCTGCCTCATCTTTTCTGTTTTCTTTCACATATGGAAAG
Seq C2 exon
AAATTACTTGGAAACTCTCTGCTGAAGCTGGAAGGTGACGACCGGCTTGACATGAACTGTACCCTGCCCTTCAGCGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001143:ENSRNOT00000041281:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0078017=CNH=PU(2.2=22.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]