DreINT0006824 @ danRer10
Intron Retention
Gene
ENSDARG00000089856 | CIT
Description
citron rho-interacting serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:1985]
Coordinates
chr5:2155857-2162287:-
Coord C1 exon
chr5:2162118-2162287
Coord A exon
chr5:2155938-2162117
Coord C2 exon
chr5:2155857-2155937
Length
6180 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
GTCTGTTCTTCTGTGAGCAGAAG
3' ss Score
5.43
Exon sequences
Seq C1 exon
ATATCCCATACGTGCTGAAGCTGGAGTCTCATCCTCACACCACCTGTTGGCCTGGTCAGTCTCTGTACTTCATGGCTCCCAGTTTCCCAGATAAGCAGCGCTGGGTGGCTGTTCTGGAGTCAGTGGTTGCTGGAAGCAGAGGATCCAGAGAGAAGACCGAGTCAGACGCG
Seq A exon
GTGAGTCCAGTCCTGCAGGTTCAGGCCGTTAATATACAATTCACTGTGTGTGTTTCTGCCATGCTTAAAGTACACATGAAATCAAAACTAGCCGTATTGATGTTGTTTGCTCACATTGCTGAACAATTCATCTGTGCATGTCACTAAGGGAAAAAATGGTTTGCCCTCATAATCTAAAACTGAAATCTGGAAAATGCACTTCCTGTTTGTGATCAATTCTCAGATTAGGTCTGTGTGAGGTAGTGGGTGTGGCTAACATACTTAGCCACGCCCCTCCAGCTGTCAGTCTTGACATCAAACAGAAATGGTGAGCAGGAGGCTGTTAGGTTGTAATAACTCTCCCCAAACCCTTTTCCCCGTCTTAATCAATGAATCGCCTATGTTACTACATCCAATCAGCTTGCAGTAAAAATTGCCAGCCACACCCACTGTTTTCTCATTTAATATTCTGTTTATTTAGGAACTGTGTCACAATACAGGGAAAAATTGCTCACAGCTTCCAGGTTATGTGGACTGTAAAGTCTGCTGAGACTTATTTCAGTATGTTAATGTACTTCCAACTGAAATGGAATTTTCGGTAAGGGGTGTGGCTTTCTTTTGAGCATCATTCCCTTATAGCAAACTAACAGTAAAAGTGGCATGGTGAAGGTTAATTAAGATACAGTTGCTATGGAAACCCTCATGTTGTCATCAACAGAAGTTTGTCTCTCCACACGCTGAAGCAGATGCTCAGATTTATTTGTAGATTAAAGTCCCCATGAGCTGGAATCTAAACATTAAATGATAAAACAGTGGGCGTGGCTTGTTTTTTCTACTGCGAGCTGATTGGATGCAGTAATGTAGGTGTTTCATTCGGACAGATAAGGAAAGGGGTTTGGGGAATGTTATTACAGCCTAACAGGCTCCTCCTCCTCACCATTTCTGTTTGATGTCAGAACTGGCAGCTGGAGGGCGTGGTTTAGTATGTTAGCCACGCCCAACACCTCACACAGACCTAATCTGAGAAGTTTCAGATTACTCCCTACAAACTGTTTTTTTCCATAATGACATGCACAGATGAATTGCTCAGCACTAAACTAGTAATGTGAGCTGACAACATCAATGTGGCTAGTTTTGATTTCATAGAGACTTTAACAAAATACACTTTTTTTCAGTTGATTAACTTGCACCGATTAATTATTTATTTTAAGAATAACAACAAAATAAACATTATACATTTTGATTTCATATGGACTTCCAGAAATCCAGAAGTCTTAAAGGGACAGTACACCTAAATTACATTCACTAATCATTTGCTCATCTTTATTTACTACAAAAATGCTTTTCTTAGGGTGCTTTCACACCTGCCTTATTTAGTTGGATTGAATCACACTGGAGTTCGTTTCCCCTTTTGGTGCGGTTGGTTTGGGCAGGTGAGAATGCAGCAATCGTACTCGAGTGCGCACCAAAAGCGGACCAAATAAGCGTACTGAGACCTGCTTGAAGAGGTGGTCTCGGTACGCTTTCAAACCAACCCTGGAGCGGTTCATTTGTGGTGAGAATATGATCCGTACTAAAACAGGTCCAAAAACAAAAAGTACTGCACCTTTTAGTCTAATTCAGCTGCCGTAGGCCGATGCGCTGTGCATTATGGGATATGGAGGAGAAATATTTGTTGACAGAGCTTTACCAACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGGGGAAAACATCACCTGATGGATTGTTGGTAATATTTCCGCAAGATGAGCATGTCACAGTTTAGCTAAATTAATTCACGCCTCCTCCTGAAGTGACGAGTGATGCATTAAACACTGTTTTCCAGCCACGGCCACGCTTCATTCTCGTAATGTCTAGTTTGTCTAAAGCAGGGATACAATCAGCCAGCGCAGTCATCCCTCCAGAGTAAAAGGTTTTGTTTACCTGCGGGAGTTCACTGGCATTTTCCCGCACATGAATTCTGACCAATCAATAAGCAGTTCAGGAAATATATTCAACAACATCTGGCCAATGAGAGATGTGGATTTTGTCAGATGACTGCATTTTGGTTCGTTTCAACTGGTTCGGACTAAAGCCAGCAGTGTGGTGTGAAAACTACTCAAAGACGGCAGAAAATGCAACAATGTATCATTTATTACCCTTGATGCAGACCAAATGAAGTGAACAGCAGATGTGAAAGCACCCTTACGTTGAGTTTTTGTCTTTCTAGTACAAATATCTACAAATACTTAAATCAAGAAGCATTTTCTAGACAAGCCACAAATATGTTCCTGTTTACAGAAATGACGTGTTAAAATGAAGTGAGTTTTTCCTTAAAATAAGCAAAATAATGTTTTTTCGTATTAATTAGTTCTCTCTGGCTGGCACGGTGGCTCAGTGGTTAGCACTGTTGCCTTACAGCAAGAAGGTCGCTGGTTTGAGTCCCGACTGGGCCAGTTAGTGTTTCTGTGTGGAGTTTGCATGTAGAGATCTGCGCGGGACTAAATTTTGAATCCCGCTCCCACTTATATTAGGAATTTGTTGTCCTGCTGCCCGACCCGCACCATTTTAACACACACACAAGCACCAAGCAGACACACAGGCGTTTGCTGTTATATCAACTCAAAGGCTTGTAATACCATGTATCAAGTACCAATGTAATACCAAAAGGTTTTATATAAAGGTATATAAATACTGAGTCGCGCCAGCTCCGGGCCGCAGCGCACATTACTCTCGGGCCGATTCCGGCTCGCTTACGGCCGCCGCATCTGGCCAGATTGATTCGGGCCGGAATCGGGCAGTGAGTCCACAAGCATCCGGCCCGAGTCCGGCAGCCGGAGCCGGGCCGAGTGGTAAGTCTCCGGCAGGCGAGGATCTAGCCGGAACTGGCCCGAGTGTATTTTCCTATCTGGGAAAGTTCCCTCTCTCTCTCTCTCATTCGTGCACGCGCGCACTAACATACACACACACAAGCACCAAGCACACACACAGGCAAAGCTCTCTCTCTCTCTCATTCGCATAGCAATATCCGCGATATTGCTAGACAGCCTGCTCCCTCCCCAAATTAAACCCGTTACCGACCGTTCCTGCGATTTATTCGGAAATTTATTCCCGCGCAGCAGAAATCTGGTCGGGTACCGCGGCTGTCCCGTGGGAATGCAGACCTCGATTTGCATGTTCTCCCCATGTTGGTGTGGGTTTCCTCAGGGTGCTCCGGTTTCCCCCACAGTCCAAAGACATGCGCTATAGGGGAACTGATCAACTAAATTAATCGTTGTGTGTGAGGGAGTGGGTGGGTGGGTGGGTGTTTCCCAGTACTGGGTTGCAGCTGGAAGAGCATCCGCTGTGTAAAAGATATGCTGGAATAGTTGGCAGTTCATTCCGCCGTGGTGACCTCTCATAAATAAGGGACTAAGCTAAAGGAAAATGAATGAATGAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACATATATATACATATACACATATATATATATATCAGTTTTGGGGAGTTTTCTAATGCTGTGAGTGTGTGGTTGTGTTCTGACCGCTGTAGGCCGGTGTTAAACGTCAGAAGACGCTCTCTCCGCTGGTTCAGGTAATCAGCTGTTTGCAGGAAGCCAAACACACACTCACTGTTGTGTGCGTGTGCATTATCCAGCATGCTCCTCTGCCCGGTGCTCGTGTTGCTTGCATCATCAGACCATGAGCTCTTGTTTTCATTGCGTTGCAGGACTCGCTGTACATCATCCACATAAGCCAGTGTTTCCTGCTGCAAAATTAAATGTGTGAGGATTCATGCTTAAAGATAAGACATCGATCACACTTTACAGTGAGGTTGTATTAGTTAATGATAGTTAATGCATTAACTAATATGAACAAACAATACATTTATTACAGTATTTGTTGCTGTTAGTTAATGAAAATACAGGTATTCATTGTTAGTTGATGTTAACTCAGTGCATTAACTAATGTTAGCAAGTATGACTGTGGATGTTAATAATGCACTACTGAATGCTGAACTATAATTAAAAGTGCTGTACAAGAGCTGTTCATTATTAGTTCATGTTACATCAACTAACATTAACTAATGGAACCATATCTGCCTGTTAAGTGGTGATGTGTTTGTGACATTGTAATACTGTTTCCGGGTCCAAGCCGCCATTCATTTGAGTGGAGAAATCATTCGTTTATGATCATGTTTTATTCCTATCAGACATTAAAGTTAATTTTATATAAAATCATAGTGTACACAACAATCTCTGGGCTTGCTGCTTAACAAATACAAAAAATTTAACAATTTATAAAACAATGAATCACTTTCTGGCCATCTGATATTAGGCATGGACATATATATTGCGATCGTGACTTTCGAAAGTATTAAATCGCTTCGTAAACGTTTATTATTACCATTTTATGAGTCTTCCCATTCAGTTAAATAGAGCGCTCGGACCCGGAAGCCAAATGGCGTGACGTCACACTTAAAAAGCGGATCGTAAAGTGTGACCCAAACATCTTGATATTGAGGCGATCTGAACACTTCTGTACATGAAGCACAACCAGGTTAATACGATTCAAAAACAAATGATTCAAATGAATCGATTCATATTAAAAGAATCACTCAGATGATTATATTAGTCAATATTTATGAAGTAAATTTAAAATTTGTGACCCTGGATTTGATAACTTTCTCGCGCTAATCAAAATGCATCACATGACCATTCATTAACCGATCCAACCCCGTCTAAAATGATATAAATTAAGCCCGAACCTGCCCAAACCTGTCGGGTCCCTTTAGGTCTGGCTGAAGATCTTCAGCTCTAATTTATTCATTTTTTCCTTTGGCTTAGTCCTTTATTTATCAGGGGTTGCCACAGCGGAATTAACTGCCAACTATCCCAGCATGTTTTACACAGCGGCTGCCCTTCCAGCTGCAACCCAGTACTGAGAAACACCCATACACACTCAATCACACACACACACACACACACACACACACACACTCATACACCACAGTCAATTTAGTTAATCAATTCCCCCTATAGCGCATGTGTTTGGACTTATAGGGGAAACCGGAGCACCCGGAGGAAACCCACGCCAACACGGGGAGAACATGCAAACTCCACACAGAAATGCCAAACAGTGCGACACCACTAAGAGACACTCTGCTGCAATGCATAATATTAATCAAAAATGATTTTTGGATAGATTTACGGAAAATAAATTTACAAAATGTCTTTTTTTTTTCACGTAATCTTTCGAATTTAAATGATTTTTGGCATGAACTAAAGATCTATAATACAGTGTCATTTCCAAAAAATAAAAAAATGTTGTGCTTTAGGGTCAGATTTGTTGATTTAGACACTGCAGTAGGAAACACTGGCAGATCCTGAAGAAGAAGGCGGCTCTTTCTGCTGATTGGCTCATCTGTCCGCAACATTAGCATTAAACACTCTTAAAGGGACAGTACACCCAAAATTAAAAATAAAAACTCCACTTTTGTTTCAAACCTGTTTGAGCTTCTCTCTTCTGTTGAACACAATAGAATGCTGCAAACCTAATAATAATACATTTTAATTATAATTTATAATGATTTTTTCTTAAACTCTTACGCATAAAGATATACAACAACAAATAAAAATGCAACCCAAGCCAGAACTACAAGCTTAACATCATATTTCAGTTACAAGTTAACAATTCTAATAATAATCATTAAAAAATGATGCTGGTGATAATCACAAGTTAAATGCTTTATTAAAAAGATGCGTTTTTAAGAAGGAGTCTTTTATAACAATCCATCCGGCATTGCTAATAATCGCCGGTAATGCATTCTGTAATGTAGGCATGCTATAAGAAAAGCACTACCTATGTATTATTTTCCTGCTATGGAAGTCAGTGCTTACCAGTATCCACCCTTTGTGTTCAGCAGAAAGTAACGCTGCAGTAAATGAGGGTTACGTTTGTTTATGAACTGTCCCTTTAACAGAGTGAGATGTGAAGTGGGTGTGTTTGAATCTCTCCTCTGTGTCTGTTCTTCTGTGAGCAG
Seq C2 exon
AAGCTGCTGGGAAACTCTCTACTGAAGCTAGAGGGAGACGATCGGCTGGATATTAACTGTACTTTACCTCTGACCGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089856:ENSDART00000122274:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(35.8=75.4)
A:
NA
C2:
PF0078017=CNH=PU(2.2=22.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]