RnoINT0037383 @ rn6
Intron Retention
Gene
ENSRNOG00000020500 | Clk2
Description
CDC-like kinase 2 [Source:RGD Symbol;Acc:1359711]
Coordinates
chr2:188481869-188482371:+
Coord C1 exon
chr2:188481869-188481956
Coord A exon
chr2:188481957-188482304
Coord C2 exon
chr2:188482305-188482371
Length
348 bp
Sequences
Splice sites
5' ss Seq
GATGTACAA
5' ss Score
-5.41
3' ss Seq
CCTGCTTTCTTTCGTTTCAGATG
3' ss Score
13.1
Exon sequences
Seq C1 exon
CAGCACAGCAGCCGGAGAGCCAAGAGTGTAGAGGACGACGCTGAGGGCCACCTCATCTACCACGTCGGGGACTGGCTACAAGAGCGAT
Seq A exon
GTACAAGCCAAATCGTAACAATCCTATAGCCTGTAATGGTCCCATAGCCATCCTAATGTCCCATGCCAACCCAGGTCACAGCCTCTTGTGCCTTTCTCAGTGGTGTTGCTCATCTGGGTGGTTTGAGTTGCTGTTGAGAACTGACCTGTTGTCCACTCCCAACTCTCATGGCCCCTGGGTTAAAGGTGGTGGGAGTCACACAGGGGTTTCTTCCCCTGCAGCCATCTATATCTGTTCCCCCTTCCTTCATCTCCTCACCCCAGGTTGCTGTGCCCTATTTTCTTCCAGTTCATCTCATTCCCCCCTTTTCTCCCTCCCTCTCCCCGACCCTGCTTTCTTTCGTTTCAG
Seq C2 exon
ATGAAATTGTAAGCACCTTAGGAGAAGGGACCTTTGGCCGAGTTGTACAGTGTGTGGACCATCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020500:ENSRNOT00000027793:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.367 A=NA C2=0.011
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(0.1=0.0)
A:
NA
C2:
PF0006920=Pkinase=PU(6.9=95.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]