RnoINT0040943 @ rn6
Intron Retention
Gene
ENSRNOG00000002302 | Corin
Description
corin, serine peptidase [Source:RGD Symbol;Acc:727887]
Coordinates
chr14:38472020-38473648:+
Coord C1 exon
chr14:38472020-38472153
Coord A exon
chr14:38472154-38473255
Coord C2 exon
chr14:38473256-38473648
Length
1102 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
3' ss Seq
TCAATTGCTATTTCTTGCAGGGA
3' ss Score
8.57
Exon sequences
Seq C1 exon
TGCCCTTTAAGCTGCAGGAGGGGGAAGTCCGCATTATTCCTCTGGAGCAGTGCCAGTCCTATTTTGACATGAAGACCATCACCAATCGGATGATATGTGCTGGCTATGAGTCCGGCACTGTGGACTCATGTATG
Seq A exon
GTAAGCTGCCTTCTGACTATGCCAGCAGTCAGGATCCTACATGATTTTGGTGAGCTTGCATAGCTCATCACAAGTCATGGTGGTCTCTCGGGAACCTTTGTGAATACCGTTCATTGCCGGGAGGTGGTTGGGTCAGCCCATCTCCTTTGATCAACTTGGTACCTCAGGCAAGCCTAATTACGAGGGGCAAGTAGAAATCACAGCTTCAAATCCGCTGTCTTAAGCAGTAGAGGGACACCAGAGGGTATCGCCAGGTATAATCATGATGACATTAGAACATACATTGACAGCCCAGCTCCCACAGTGTGTGAAAGGACTTCCGTCTGCAATTGCTTGATATTATGCCATGGCCCCCATTCGATGACCAGCCTGTCACTGTCACTGCATCCAACCTCAGGATCATGGCCATAGTGATCTTCCAAGCATGCCTCACAGGCAGTGCTGGGGTGGGGTGGGGGTTCATACGTTTACTTACATCGGCTACTGTGCTGCGTCTCTCTGGGGTTCAAATGGGCAGGAGCACAAAGTAGCAGGCAAGCGAGGAGCAGGTTGTGGCTCTTCTACATTGCTGTTCCGTTGCTCCAGAGGATCAAACTGCTCCTCAGATTTCCGTAGTCAGCGGAGAGAAACCATGCTCATCCTAAGCCCAATTGCATGGCATTTGGGATGGTTCATTTTAGAACATTATGTAGAACTGATTAATTGGGGATGTTTTAATTTTCCATTTTTGGGTACTTCCCACGTTTATAAGACCAATCCAACTTAAACAATAAAATTGTCGAGGCAATTAGGTTTGATGCATAAAGATTTTTTTTAAAAAATTATGACATTTTGTGGTGTGTTATATAAGTCGTCTGACCTCACGACAAGACAGAATGGACTCTCTTCACTCAGTGCATCAATTCCTTTAAAACTCAGAATCCGTCGTGCTTATTGGAAAGTTTTGTTTACACAGATGCCCTCCCAGGCTAACCATGGAAAACTTTGTTGAAATTTTCCAATTCAATTAAGCTGATTTGGGCTTTATTGTACCCTTAGGATGATAGCCCCACCACTAGACCTCTGAACTCCCATGGCTAACATCAATTGCTATTTCTTGCAG
Seq C2 exon
GGAGACAGTGGTGGTCCTCTGGTTTGTGAACGACCCGGAGGACAGTGGACATTATTTGGTTTAACTTCATGGGGCTCCGTCTGCTTTTCCAAAGTCCTAGGACCTGGAGTGTACAGCAATGTGTCTTACTTTGTTGACTGGATCGAAAGACAAATATATATCCAGACCTTTCTCCAAAAGAAATCCCAAGGATAATCAGAGACTTTGTGGGAAACCTACACGGAGAATGACCCTCTTGAACAGGAAGCTGCCAAGAGCTGTACGAACAGGCGTGTCACGGACATGATGCTCAACACGCACTACAAGGTCTCCTGTTTGTTAGTTTTCCTCAGGCTTCAATCCTTTTCAACATTATCATTCATTAATTTCATGGATTCTTTTCAAAGCACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002302:ENSRNOT00000064128:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.2=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.5=72.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTCCTCTGGAGCAGTGCCA
R:
GCAGCTTCCTGTTCAAGAGGG
Band lengths:
351-1453
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]