RnoINT0041735 @ rn6
Intron Retention
Gene
ENSRNOG00000008947 | Cpz
Description
carboxypeptidase Z [Source:RGD Symbol;Acc:620496]
Coordinates
chr14:80408846-80411150:+
Coord C1 exon
chr14:80408846-80408878
Coord A exon
chr14:80408879-80410775
Coord C2 exon
chr14:80410776-80411150
Length
1897 bp
Sequences
Splice sites
5' ss Seq
GTGGTAGGT
5' ss Score
7.23
3' ss Seq
TGCTGACTCTCCTTCTCCAGCCA
3' ss Score
7.23
Exon sequences
Seq C1 exon
GTAAATGTCAGAGACTGGCCTCCACACACAGTG
Seq A exon
GTAGGTACCACCCCACCCCTGCTTTTTCTCGTAGGAACTCCATGTTCCCCTGACCCCCATGCTGTCAAAGCAGAGATGCTGGCTTCGGATGTGGCTAGCAGGGCAGGCACAGAAAATCCGGTGAAGTGAGACTAAACAGGAGAATAGTCTTCCCTGCCTGCCCAGCTTGGCCTGGAGGCAATGCTAGGGTCCCTCCGAGGCCAGCCCTGTGTTTGTCTCTTGCTATAAGATTCTTCCCTTTCCATGGTGGGGAGATGTTATGCTCAGGGGAGAGCTCAGGGCCTCCTGCATGTTATTCACAGGCTGTGTTTCTAATCCACATCCCACATCAGAGAAGCCACCCTCAGCTTCTGGTCCTGAAGGCCCAGCTGGGTTTGTAAACTTGGACATGTCCTCCCTGAGATGAGCAGGAGAGGTAGGCATCTTGCTTAGTGACTTGAAAGCTATGATTCAAAACTCTCAGGCCAAGGCTGAGGAGACATCTCTCTCCCACCAGCTGTGCACATCTGGTGTCTTCTATACAGAGATTTATAAAACAGGGAAGCATTTCCTCTGTAGAACAGCAGCGCCATAGCTGAGCTCCGTGGCTCGTGTTTGTCATCCCAGCATTCAGTAGGTCAAGGCAGGGATTACCATGGGTTTAGAGCCAACTTGGGCTATGTAGAAGTTCTAGGCTAGCCTGGGCTACAGAGTGAGGGCTGTCTCCAAAAAACCCAAGAAGCTGGCTGACAAGATGGCTCAGTGGGTAGAGGTGTCTGTTGCCAAGATTTACGGTCTGAGTTAAATCCCTGGGGTCCACATGGGAGAAGAAAAGAACTGACTTTTGCAAGTTGTCTTTTGATGTCCATGCTCCTGCTGTGGTGTGGACCACCTATAAATAAGTGAATTAAACAAACAAACACCAAACCAACCAAAAAAAAAAAAAACCAAAAAACAAGGCCAAGTTGTGCATGCCTTTAATCCCAACACTCAAGAGGCAGAGATGGGCAAATCTCCAAGAGTTCAAGGCCAGCCTGATCTACAAAGCAAGTTCCAGAATAGCCGGGGCTGTTATACAGAGAAATTCAAACAAACAAACAAAGAACAACAACAACAAAAACCAAACCCAAAATAAAAACCCCACACCCCAAAGGCCAGAAAATAAGGCCCAAATCAACATATCTAAAATGCTCTGAGTGGAAGGAAGATGGACGTGAACAGCCATGTCCTTCCCATGCGATGATGGTAAGATCTTGGGTCAGTACCACATAATGTCTCTGATGGGACAGTGCAGATGGTAGTGGCAGAGGGAGAGACTAGAGTGAAGGTCATGACTCTGTGCCCAGCAACTTCCTGTTCAGAAGTGTTTAGAAGTCTAGAAGGCTTTGCCTGACAAATGGTGGTTGCAGGAGGGAGGGCCACCCATGTTGGTCCAGCACAAAGCACCTAATGTCACAGGAGTTGGACTCCTTTGGCCTGGCCTACAATGTCCTTGTAACAAGAGGAGAGACATAGCCAGGCCTGCAATGTGCAATCTGAGAGGACTTAACCTTGTCCTGAGGACGGGATAGTCCACATGAGATGGGTTCTCATGAACAACTCTCCTTTTGGCCTGTATGAGGGGGCTCCTGCTTTTGACAATCCACTGGCCTCATCATGCATCCTCAGGCAGGGCAGGCTGCCTGCTCCCCTTCTGCTGGTCCCTTTGCCATCCTGGCCCACTTTCTGGTAGGTAGCTGGCTGGGTGCAGTTCCTTCAGAACCCCTTGCTGTGTCTCCCACAGACCCTGCTTCCTCCACGGCAGCCCTGCCCTTGTCTCTCCCCACAGACTGGGTGCTTCATTGTTGCGAGCCCTGGTCTTAGGTGGTATCGACCGGGGCATGGGTCATCATGTGACCTGCTGACTCTCCTTCTCCAG
Seq C2 exon
CCACCTGTGTGGACCTGCATCTCAGGACCTGTGCGGATGCGGCCTATAACCATACATCGTTCCCCACACCCCTGGAGCACCGTTCGTGGGAGGCAGTGGAGGCCAGCCCTGAATACACACTGTTGGGTGTGCTGCACTTTCTCCTGGAGGGTCAGTGCAACCCTGATCTGCGGCTGCTAGGGTGCTCTGTGCTGGCCCCCAGATGCCAAGGAGGCCACACACAAAGGCCCTGCCGCCGTGTCTGTGAGGGCCTGCGGGAGGCCTGCCAGCCAGCCTTTGACGCCATCGACATGGCCTGGCCCTACTTCCTAGACTGTACCCAATACTTTGCACCAGAGGAGGAAGGCTGCTATGACCCTCTCGAACAGCTCCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008947:ENSRNOT00000012109:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0139217=Fz=WD(100=92.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGTCAGAGACTGGCCTCCA
R:
GTCTAGGAAGTAGGGCCAGGC
Band lengths:
344-2241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]