MmuINT0041949 @ mm10
Intron Retention
Gene
ENSMUSG00000036596 | Cpz
Description
carboxypeptidase Z [Source:MGI Symbol;Acc:MGI:88487]
Coordinates
chr5:35517393-35519113:-
Coord C1 exon
chr5:35519081-35519113
Coord A exon
chr5:35517768-35519080
Coord C2 exon
chr5:35517393-35517767
Length
1313 bp
Sequences
Splice sites
5' ss Seq
GTGGTAGGT
5' ss Score
7.23
3' ss Seq
TGCTGACTCTTCTTCTCCAGCCA
3' ss Score
6.96
Exon sequences
Seq C1 exon
GTAAATGTCAGAGGCTGGTCTACACACACAGTG
Seq A exon
GTAGGTGCCACCCCACCCCTGATTTGTCTTGTAGGAACTCCACAATCCCCTGATCCCTGTGCTGTCAAAGCAGAGATGCTGGCTTTGGATGTGGATAGCAAGATCCACGGAAGGGAGACTAAACAAGAGAGTAGCCTGCCCTGCCTGCCCAGCTCTGCCTGGGGGCAATGCTAGGGGTCCCTCCAAGGCTAGCCCTGTGTTTGTCTCTTGCTATAAGTTTCTTTTTCTTTCCTTGGAGGGGCATGTTATGCTCAAGATAGAGCCCAGAGCCTCCTGCCCGTTAATCACAGGCTGTGTTTCTAATCCATGGCCCCTGACAGAGAAGCCATCCTTGGCTTCTGGCCCTGCAGGCCCAGCTGGGTTTGTAAACTTGGACCTGTCCTTCCTGTGATGAGGAGAAGTAGGGCATCTTGCTTAGTGACTTGAAAGCTATGACTCAAAACTCTCAGGACAGGGCTGAGGACACACCTGTCTCCCACCAGCTGTGCACATCTGGTGGGACACACCTGTCTCCTACCAGCTGTGCACATCTGATGTATTCTATACAGGGATTTAGGAAACTGGGGAGCATTTCCTCCATAGAACAACCGGCACCATAGCTGAGATTTGTGGATCATGTCTGTCATCTCAGCATTTAGTAGGCTAAGACAGGGGATCTCTGTGAGTTTAAAGTCAACTTGGTCTATGTTGAAGTTTTAGGCCAGCCTGGGCTACAAATTGGGGGCTATCTCAAAACAAAACAACAACAACAAAAACAAACAAACAAACCAACCAACCAAGAAGCTGGCTGACAAATGACTCAGTGGATTGCAGGAGGTAGGACAGTGGACACCCATGTTGGTCCAGCACAAAGTGTTTAATATCAGAGGAGATGGCCTGCTTTGGCCTGCACTTACAATGTCCTTGTAACAAGAGGAGAAACAGAGCCAGGCCTGCCAGGTGCATTTTGAGAGGACTTAACTTTGTCCCGAGGCTGGGATATTTCACATGGTTCTTGTGAGCATCTCTCCTTTGGGCCTGTATGAGGCTGGCCCCCTGCTTTTGCAGGGCCAATTCACTGGCCTCATCATGCATCCCCTGGCAGGGCAGGCTGCCTGCTCCCATTCTGTGGGTGCCATTGTCATCCTAGACCATTTTCTGGCAGGTAGCTGGGTGCAGTTGCTTCAGAGTCCCTTGCTGTGTCTCCATGGACCCTGCTTGCCTCTGTCTTTGTCTCCCCACAGACTGGGTGCTCCATCATTGCAGGCCCTGGTCTTAGGTGGTATCTACTTGGGCATGGGTCATCATGTGACCTGCTGACTCTTCTTCTCCAG
Seq C2 exon
CCACCTGTGTGGACCTGCATCTCAGGACCTGTGCGGATGCCGCCTATAACCATACATCGTTCCCCACACCGCTGGAGCACCGGTCGTGGGAGGCAGTGGAGTCTAGCCCTGAGTACATGCTGTTGGGTGTGATACACTTTCTCCTGGAGGGTCAGTGCAACCCTGACCTGCGGCTGCTAGGGTGCTCTGTGTTGGCCCCCCGATGTGAGGGAGGCCACACACAAAGGCCCTGCCGGCATGTCTGTGAGGGCCTTCGGGAGGCCTGCCAGCCGGCCTTTGACGCCATCGACATGGCCTGGCCCTACTTCCTTGATTGTGCCCAATACTTCGCACCAGAGGAGGAAGGCTGCTATGACCCTCTGGAAGAGCTCCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036596:ENSMUST00000038676:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.010
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0139217=Fz=WD(100=92.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCTGGTCTACACACACAGT
R:
GGTGCGAAGTATTGGGCACAA
Band lengths:
356-1669
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types