DreINT0051667 @ danRer10
Intron Retention
Gene
ENSDARG00000075521 | cpz
Description
carboxypeptidase Z [Source:ZFIN;Acc:ZDB-GENE-090313-267]
Coordinates
chr1:40099767-40102332:+
Coord C1 exon
chr1:40099767-40099796
Coord A exon
chr1:40099797-40101957
Coord C2 exon
chr1:40101958-40102332
Length
2161 bp
Sequences
Splice sites
5' ss Seq
GTCGTAAGT
5' ss Score
9.9
3' ss Seq
CTTTTCTCTCTCATCCCTAGCGC
3' ss Score
11.34
Exon sequences
Seq C1 exon
GAAGATGCAGAACACCTGCAGAAGAGGGTC
Seq A exon
GTAAGTATTATTATTTTTTAATTTTGTTGTGCAAAACTAATCGTTACTGCCTGTTCCAATATGAAATACACAAGTGATGTTGATAAGTGTTCAACGAAAAGTGCAAAAAGCTAATAAATATATACTGTTTAATATAATATAAAATAATTATTTAACACATTGAAAGTAATTGCAGCATATTGTTACGTTAAAATATTCACATTTATGTAAATATGTTGTAAAATTTGTTATTGAAAAGTGTTTTAAAGCAAATCCTACAACACATTTTAGCATACAAGTGAGAAAAGTCTGAATACCAAACTGCACTGCAAGATGGGACTCGTCTTCATCAGGAAAGACATGTTATATTCTTAAAAGCCTTAGGCTGATTTAAGCCTATAGTGAAAGATTTGGACTGCACACACAATAGTGCACATTTGTTTAAATGGACACATAGTGAACTATTTTAAAGGTCCCCTTTAGATGTTCTTTTGTCTTGAGTTTACTACAGTATGACCTTGCAGCTACTATGTATTAAAAACCAGTAGAGTTAGAGTGATTGGGACACAAACTAACACTAAATTAGTTGACACACAGTTCAAGCATTTCCACACATGCTAAAATCAGAAAACGTACAATATTTAGGTTACTAGTTGAAATATCAACACAATATACACATTGTAAAACCCAATAAGTTGAGGTAACTCAAACCATTTGAAGTAACCGATTGCAACAAACCATTTAAGCTCAAAAACTAATCCCAATGAGTACTGTGAACTTAATCCATTTGAGTAAATTAAGCAATTTGAGCACTGTAAAACCCAATGAAGAGAACTCAAATCAACTGAGTACTGTAAAACACAATAAGTTAAAGCAACTCAAACCAATTGAGGAAACAGATTGCAACAAACCATTTGAGTAAAAAATTCATCTATATGAGTACCATGAACTTATTCGCTAACTGGCTGAAAACACAATCAAGTTACGGATAAACAATATAATCCTTTGAACCTAATGTAGATACATATAAACTGAGAACTTATAGTAATGGTCCTATACACAGGCGTTCTATTCGCTCTTCATAACTTTGCAAATACATGACCTTAATCTTCCAACTTTGCAAAGCATGTTTGACATTTTTGTACAGTACATTCTGAGAGCTACAGTACAGCTTGTACCATGTCAATACTGTACTGCTATGTTTAGTCATTTATAGTGTTTCCACAGAACTGCATAATTTTGACCCGGTAGCTCTGAGTAGAACATCATGTGTTGTCATGTCTGAATTACGGTAATTTGGCCATGCTGTGAATGCAGCAAATCTCTAATAATTGCTCTAACGAGAGTCTGTTGACAAGTTAAAAGGATTAGTCACCCAAAAAAAAATTAAATTCTGTTATCATTTACTTACGCTTGACTTTCAAACCAGTTTGAACACATATTAAGCTATTTTGAAAAATGTTGGAAACATGTTACCATTGGCTTGCATATGGTGTGAACTGACTTTTAATTGCTCCTCTGTGTATTTGATTCATTAACCCCTCTCTTTATTGCCTAACATTAAAAACATTCCACAGCAGATGACTTTCCACACACTGCTCCGTTCCAAGAACTGGGAGCATAAACTCTGACTGCTGCAGTTACCATATTAAAGGGACATATCATCCAAATACAACATTTCTGTCATCATTTACTCTTCATTTGTTAAACACAAAAGAAGATATTTTGAAAAATGTTGGAAGCCGGTCACCAATGACTTCCATAGTATTTGTTTTTCCTGCTGTAAGTGTATTTGGTTAAAAGTTTCCAACATTCTTCAAAATATCCTCTTTTTGTGTTCACCAGAAACCAAAAGTCATAAAGGTTTGGAATCACTTGAGAGTGAGTAAATAGTGAGTCAAATTTATGTTTGGGGGTAAATATACTGTAAAAAATCCCGGGTCCCACACAATTCCTTCATGTTGCCCCAACACAAATTTAAGTTAACTTAATCGTTTTTACAAATGTAAGTGGATTGAACATAAAACAATTAAGTTATCCCAAAAAAACCTAAGAATTGGGTTGTGCCAACTCATTTTAAATAAGTAGTTTGAACAAGCAAAGTAATAAAGTGCTAATCTACACTCATTTTTTTAGCCACCAGCCTAAAACGGACTCTAACTCTTTTCTCTCTCATCCCTAG
Seq C2 exon
CGCAGTGCATAGAGATGGTTCTTGGCTACTGTCAGGATGTCCCATACACCCACACTACATTCCCCAACATTGTGGGCCACCGTACACGGCAGGATTTAGAGATGGGTGCAGAGTACCTGCTCCTGAGCGTGATCCACGGCCTGATGAAGGGAGAGTGTTCTCCAGACATCCGTATACTGGGATGCTCAGTTTTGGCTCCTCGCTGTGAAAACGGGAGGCTCATGAAGCCGTGCCGCAGCTCCTGTGAGATGCTGAAAAAGAGCTGCATTCATGCCTTCGAGGCCATTCAGATGGCATGGCCTTACTTTCTGGATTGCGACCGCTTCTTTGTTGGCAGCGAGGAGGGTTGTTATGATCCACTGTCAGAGCTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075521:ENSDART00000147497:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0139217=Fz=WD(100=92.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]