HsaINT0041100 @ hg19
Intron Retention
Gene
ENSG00000109625 | CPZ
Description
carboxypeptidase Z [Source:HGNC Symbol;Acc:2333]
Coordinates
chr4:8594387-8601212:+
Coord C1 exon
chr4:8594387-8594648
Coord A exon
chr4:8594649-8601179
Coord C2 exon
chr4:8601180-8601212
Length
6531 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGG
5' ss Score
10.19
3' ss Seq
TGCCATGTCTCTCTTTCCAGGTG
3' ss Score
13.24
Exon sequences
Seq C1 exon
AGCGGCATCCTCTCTCTAGCTTCTGGCGCTGCCCACTGTAACCCGACTCCGGCATTTGCGTTTGGGGCGCCCTCCCTGCGCCGGGGGCGGGAGCCCAGCGAGCGCAGAGCCCCGGCCCCGCGCGGCCCGAGTGCCACATCACTGCGCTGGCCGTCCAAGGTCCGCCGCCCCACCATGCCGCCCCCGCTGCCGCTGCTGCTCCTTACAGTCCTGGTCGTCGCCGCTGCCCGGCCGGGGTGCGAGTTTGAGCGGAACCCCGCCG
Seq A exon
GTAAGGCCGTCCCCTGCCCCCACCCTCCACCCTCCACCCTGCAACCTCTGGGGAGTGTGATCCGTCGCTTCCCAGGGGCCCGGGAGCTTTCTTCCAGTAGGTCACGCGCCTATGGTCCTGGCGAGAACGTCTCCAAAGTGGGCAGCATGTGGCCTGGGACTGGTAGTGTGACCTCTCCCCTGGACGGGGACACCAGGGAGGCTCTCTACGGCATCCAGGCCGGGACCCCAGGCAGCAGAGGGTCACCACGCCTGGGCCGGGGGGTGAGATCTTTTTCCTGTCGGACACAGCAGCAGGGGCGCCCTGCAGGTGGGTTCGAGGGAGCAGGTGCCAGGACTTTGCAGGGTGAGAGGCCATCTAAGGTCCCCGGGTCTTTCCAGGAACGGGACAGTCTCTCTGGGCTGTGGCAAACTCTTGACCCCTCCCTCCCAGCTGGGGCTGTGATGTGGACAGCAAGTCTCCGGAAGTGGCCCTAAGGGCTGGGAGGGGGCGTGGGCCCCCTGGAGGGATCTGGGGCCCGGAGAGGGAATGGACGCAGGGATCCTCTGGGAGGTCTGCCCGCACGACCTCACCCAAGGGGTGTGCAGCGGGGGTGGGGAGCAGGAAGGTAGAGGCTGGGGGCTGGATCCTGGGCTCCCGTCTGGCCTCACGGCCTCTCCAGGTGTGGGGGTGCATCTAGCCAACCGTGCTCAGGACTCTCATCAGAAGCAGACATCTGGGCTCCTGCGGGAGTGGGGCCGTGTGTGGGTTCAAGGGTGCAGGGTGTCAGGTTCTGAATCGCTTGTTCTCTGGGGTTTGTGGATACCTGAGAACTGCCTGAGCCCTGCGAGTGGATGTGCCAGGACCACAATACCCCACCCCAGTGCGCTGTGTCGACACTTTTCCTTTCCGTCCTGTTGATGCCTGGATTTTCCTCCCACCTCTGCTCCTCGCCTTACCTCTGGGCTCTTTTCTACCCGCTGCGTGTGTGCTCATGCAGGTGTGCAGGTGGGGTGCTGCTGGAGCTTGTGCCGTGTTGTGGGTGGGCCTCCCCTTGGCCCCTGAGAGCCCAGACAGTATCTAGAATCATAGGCTTGTTGGAGACCACAGCCCCCTCCTCCAGGAAGCTCTCCTGACCTGCCCTTTCCCAGGAAGAAATGCAGCCTCCTCCTCTGCACGCAGGCAGCACAGACCACCCTGTCCTCACCCAGCAGGATGCATGGGCTGGTCTCTGTCCCTGGCAGGTGCTGAGCACAGCCGTGGCATCGGCAAGTGTTTCTGGGAGAAATCACTCATCCCCCAGTCCAGTCTCCCCTCTTATGGACGAGTGTGGAAGTCAAGGACGTTTCCAGCCCACAGGCAGAAGTGGGCAGAGCCGGTCACCTGCAGTGCAGGTCCCCCACCCCGGGCTGCCATGTCCCTGTCTCGCCATCTGGGTCTTGCTGAGAGCAAGCCTGGTGCTCTCTCCTCTCTGCCTCACCCTTCCCTGGTGGAAGATTCCCTGTCCTCACTGGAGCCTGGGGACGGAGGTAATTTTCATGTCCTAGGGTCTGGGATTCAGATTCTGACTCCTCAACTCTGCTGTGTGACCTGGGCAGATGGCCTGACCTCTCTGACCTCATTCAGGTCTCATCCCTGACCCAGGCACAGCCACTGGTCAGTTGAGGAGGGGGAGGACTGACGGGCTGTCACTCCCCTGTTGAAGAAATGCTGCCACCTCGTGGTTAAGAGGCTTAGAACTATTTCAAAAGCCGCTTTCAGACCAGTGCTGTCCAACAGAAACACAAAGCCATCCACGCACAGAATTTTATATTTTCTAGTAGCCACACTAATGAGGTAACAGAAACAGGCGAAACTGATTTTAATAACAAATTCTTTTTTTTTTTTTTTGAGATGGAGTCTCACTCTGTCGCCCAGGCTGGAGTGCAGTTGCGCAATCTCAGCTCACTGCGAGCTCCACCTCCCGGGTTCACGCCATTCTCCTGGCTCAGCCTCCCGAGTAGCTGGGACTACAGGCATCTGCCACCGCGCCCAACTAATTTTTTGTAGTTTTAGTAGAGACAGGGTTTCACCGTGTTGGCCAGGATGGTCTTGATCTCCTGACCCCGTGATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACGCCTGGCCTGTAACAGATTCTATTTAACCCAATATGTCCAAAATATTCCAGCATTTTGGCATTCATATAAAAATTATTAATGAAACACACTGTTTTTAGTACTAAGTCTGAAATTTGGTATGCATTTCACACATCGCACACATTGGTTTGATCTTGCCACATGTGAAGGGCTCAGTGGCCACGTGTGGCTCGTGGCTGCTGTACTGGAGACCATGGCTTGAGAGCCTTCTAGGGGCATAGGCTTTCACCCCACTGTGCGTTTGCAAGTCTGCAGGGGGATCCGGGGATGTCTGTGTCCCACGGTGGTTGGGGTGGGGAAGCAATGGTGAATAGCCTAACCAGCCACAGTCGTCCTGGCTTTGCTCTGTGGCTGCCAGGGCAGGTGCGGCCTGGGAGAGGCAGAGGGTGGGCTTTGGGTCAGCAGGCCCACCCCCGTGTGGTAAGGGGCAAAACCAGAGGCCTACGGAGGCCAAGGCAGCTGGCAAAGGCCCAGCCACATCATGGGACTAGCTGTGTGGTCTTGGGGCAGTTGCAGCCCCCGAGGGCTCCTCCCAGACCATCCTGACTCTCTTGTGGCCACAGCAGCACCCACTGGGGCTTGCTGATTGTTGGGGGAAGAATTGTGTTTTCCAGAAAAGACATACTGATGATGTAATCCCTGGCACCTGTGAATGGGAGCGTACTTGGAAACAAGGTCTTTGTGGATGAAATCTGATTCAGATGAGGCCTCACGGGATTAGGGCAGGCCCTAAGCCAATAACTGGTATCCCTAGAAGAAGAGGGAGATTTGGGCAGAGACAGACACAGGGACAAAGTTCACACATGACAACAGAGGCAGGGACTGGAGTGCTCTGGCCACGAGCCAAGGAGCACCTGGGGCCACCAGGAGCCGGGAGGGGCGGGAGAGTTCTTCCCTTAGAGCCTTGACAGGGAGTGCGGCCCTGCAGACCTGCAGACTTCCAGCCTTCCAGCCTCCAGGGCTCTGAACTGTTGTTGCTTTTTTTTTTCAAGATAGAGTCTCTCTGTCACCCAGGCTGGAGTGCAGTGGTGTGATCTTGGCTCACTGCAACCTCCACCTCCCAGGTTCAAGTGATTCTCCCACCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGTGTGCCACCATGCCCGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCGTGATTCACCCGCCTAGGCCTCCCAAAGTGCTGGGATTACAGGTGTGGGCCACTGCACCCGGCTGTTGTTGATTTAACCTAAGCATGGTGGGCGCTTTGCTAGGGCAGCCCTGGCAAACAAACCCACCCCTCTCTGTGCCTTGCACATGGCGGCCAGTGGAAGTGGGGGTGACCCAGCCAGCAGACACTCTTCCTGCCCCTTGGGAAACCCCGATGGGGCTGCATGGCTTATTGTGGGGTCACAGGGGATAGTCCTGCTCCTGCCCACGATATGCCCCAAGACTCTGTGTGTTGAGCATTCACTGGGCACCTCACCCTCCTGTTGTATTAATCTTGATGGATCCTCCAACAGCCCTATGAGGTAGACGTGATCCTTATCCCAATCTACACATGAGGAAACTGAGGCACGGGCAGTGGTTCATCCTGGAGTCTTAGTGCCCTCATCTGTGAACAAGGGAGACTGGAAGCCACAGGAAGCCAGGAAGGATCGCCTGTCCAGTCCCTGTGTGATGGTCCAGTCACTTGTGTGGGCGCTTGGTGGCTTTGGAGGAGCAGGTGCAGGGATGGACACCTCACCTTGTAGCTCCCTGAGGCCAGCAGAGTTCCCAGGGTCAAGTCAAAGTTAGTTCTTCCAGTCGCTCATGTCTGCTGAGTGAATAAACAAAGTTCCAGGTTCACCCAAGCTCGCCAGCTCAGGGCCAGGCCACGCTCAGTGCCAGCCGGGCACCGTCAGAGCCTTGTGATGGGTACCCAGGGAGTGGAGCAGGGGTGCTGGGCTGAGATCACCTTGACCCTTGAGCTGACTGTGCTGTAGCATCTGCCTCGGTCCAAGCTCAGTGCAGGATGAGACCACGGGTCAGCTGAGTGCAAACCCTGCTGCCAGAGTGGCCCCACTGGTGGCCAGCTTTGCACACCGGTGCTCGCTCAGGGCCCTGCACAGGATGGGTGCTCACACAGGGCCCTGTGTGGATGCCAGCCTTTTATCTGCTCTTCCCAACATCACCCAGTTGTCTTTAGCCACACTGACAGGGGGGTGAGGGCACAGTATTTCAAGCAGAATCCCGGACCAGCTTTTTTTTCATTCCTTTTTTCCTAAAGTTCAAGCTGTCATGCCTCCTTTATGCTGCAGATTGGTGGAGTCTGGGGACGCTCTGTCTGGACCATGAAGGCCTGGGAGTCACGTGAGGGTGCCAGGGAGGGTGTCTGGACAGTCTCACGCCCACAGGCCCGTGACAGTCATCCAGGGGGACTCAAGCTCCTCTGTGCTCATCCCAGCGCGCGTTGTGGGCGTCCGCGGGCATGGACGGGCAGGTGGGCACACTGCAGCACCCCTCTTGGGTTAGGGCCGCCCCACTCCCAGGTGCTTTAGGAAAACAGTGCCCTTGCCTGCTGCTCTCCCACACTCAGCACAGCAGGGCTCCTGCAGCTTGTCTCCGGGTTGTTCTGAAACCATCGCAGGAATGATGCACACTGTGGCTGATGGAGCCTCTTCCCCCCGGAAGATCGTGTGCTGGGCTCGGACCATAGGTCGTCTCATCTCACAGTATTCCTACAAAATGATTATAATGAACCCATGTGAAATGGGGGAAATGGAGACACAAAAGAGCCACTTGCCCGGGGCCCCCGGCTGTGATGTGGCGGTTGGCACCTGGGCCCGGTGGTCTGGGGCTGGGCATCTTCCCTGCCTTCCACAGCCCTTGTGGTTCATAGTCCATGTTCCCTGCCAGCTTGGACAGGGAGGGAGAGTGAGCCCAAGGGCAGCCGTGTCTTCCCCAGGGCCGCCCGCACACGCCTGTTCCACGCCCGGAGAGCGCTGTGTGGACCTCTTTTGTCATCTGTGATGAGGATGGAAACGGGAGCTCTCCTAGGAGTGCCTGGTGGAGGACTAGTGCCCTAAACGTCCCCATCCCACAAGAGCTCTGTGAGCTGAATGGTGTAGGGATCCAGGACTGTGGTTGCCCAGTCCCCAGTGGGGAAACCCAGTCCCAGGAAGTTCCCGAGGGTGGGAGCTGCCTGGCCACAGAGCAGCCCAGGTCTCTCTGACCTTTGGAGAGTTGCCATATGCTCAGCCAAGTTTTCACAGCCCCCAGATCCTAGGGTGAGCTCCGAAAAGCGGCCTGCACTCTCCTGGCCTCAAGGTTCTGTCCCAGGTTTTGGCTGGAGGTGAAGTCACAGCCAGGCAGGCAGGCCTTTTCCTCTGCTCCAGCCTGCTTGCCCCCTTCTCCCTGGCCCCCTGCACCCACTCCACACGTCCTGCCTGTGGGTCACGTCCCCTTCTCCGGGTTCCTGCTGCTCCCACTGCCCAGCCTGCCCCCTCTCTGGCCAGGTGGGCTCCGGCATGGGCCCGTCCCAGCACTAGCCGGGTTTTAAATCTGATGCCGGGTTCCCCGCCTTGGATGCGTTCTCGCTGCCTGATGCACACAGAGCCTTGGGTCCCACTTCATACAGGGCCCTTAGCAGCCAGCATTGCTTAGGGTTGGCTGTGTTTGGCCTTCTCAGAGGCCTTACTGTTGGGTTCACATGTCTGGGTTCAGAAAGGGCCCTCGAAACCCCACGATTGTGAGGATGGTTTTGTGTGTTGATCCTTTGTTCTTGGAAGAGGGCCCCTGATTCAGGAAATGGGGAGAGGCCACACCCTGGTGGTGTCCTTGGGGGCACGGAGCCTGCGTGGCTGACTCTGGGAGGGGCCTGGGTCTGGGTGCAGCAGTGCCTGCTGGTGAGGGCTCCGGGGGCTGACAGTTAAAACTTTTGGAATCTTCTGAGGACTCAGCGGCTTACGGTGGGAAGCTTGAGATTGGCCACAGTAGAGGTACTTGTGCCCCAGCACTCACAGATGCCACCTCAGGGCTCTTCTGTCCTGGACATCAGGCTTGTGGGCACCATGGCCCAGCCCCGGGCTTCGAGCCAGATGGATGCCACTGACGCCTGCTGCTGCCTGTCTGTCCTTAGGCAGGTCATGTGACCTCTCAGACGCAGCTTTCATGCCTGGGAAATGGGGGTGACTGTGGTGTCTGCCTCAGGGGCTGCTGTGAAGACTCCATGAGATGGAGCTGGCGGAGGGTGGCCTGGGCTGGTCCCTACCTGCACTCAGGGCCCTGGCCGTGTGTTGCCCGGTGAGTGAAGGATGGCGAGGCAGGTCCCTAACAGTGCCATGTCTCTCTTTCCAG
Seq C2 exon
GTGAATGCCACAGGCCACCAGCTGCAGACAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109625-CPZ:NM_001014447:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=NA C2=0.276
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)