RnoINT0041733 @ rn6
Intron Retention
Gene
ENSRNOG00000008947 | Cpz
Description
carboxypeptidase Z [Source:RGD Symbol;Acc:620496]
Coordinates
chr14:80403001-80408878:+
Coord C1 exon
chr14:80403001-80403141
Coord A exon
chr14:80403142-80408845
Coord C2 exon
chr14:80408846-80408878
Length
5704 bp
Sequences
Splice sites
5' ss Seq
CCGGTAGGG
5' ss Score
7.63
3' ss Seq
AGGGTTGTCTCTTTTCCCAGGTA
3' ss Score
8.46
Exon sequences
Seq C1 exon
CACATCACTGCGCCCTCCCGCGCATCCGCGCATCTGTGCCCACCATGCCTACAACGCCGCTGCTGCTGGCTGCGCTAGCTGCTTTGGCCGCGCTGGCCGTTGCTGCGTACTCCAGCTGCTCGCCTGGACCTGACCCCTCCG
Seq A exon
GTAGGGTCCCAGCCGCTCTTCTGGGTAGATTTAGATACCCCTCCCTTCACCCACCTGGGAACTTTTCTGTCCTTATGGGTCGCAGAACTACCGCCTGGATAGAATGTCCCGAGGGTGCCACATTGTGACCCTTAGCCAATAGAGAAAACTGTTGGGGCACTGGGCTGTCTCAGCATCTGAGCCAGAGACCCCAGGGAGACAGCAGAACTGGGAGGTATCGAGCACCAGCCACTGCCTAGCAGGCACCTGGACTGGTGGGATTCAAAAGCAGGTCAGAGTGAGCAGGTGCCAGGACTGCAGGACCTCCCTGCAGTCCCCTCTCCTTCCAGGAATGGGGAGGTGCTGGCCACAAAAGACTCCTGACCCTTCAAAACTCCTGGCTGCAATGTGGATAACTTTTTATTTCCGGGAGTGGCCCAGAGAAAGGTGGAATGTTTCAGCAGGGATAGGACAGGGAGAAGGAGGGGCATCCAGGGATCATAACTGAGGGTCCTGAGGGTGGGTCTGGAGTCTGGTGCCTCGCCAGAAGCTGGGCTCCAGTTTCCCTCTTTTCTGGGTGGGGGTACATCTACTTCACACCCTTTATGTCTTTATCAATAGCAACCACCTGAGTCTAGCTGGAGGCCCCAGGGTCTTCAGAGCCTGTGGTATCAGGTGTAGAATTTTAAGAGCTAGGATTTGTGGTCATCTGAGAGCCTGCCTGCTCTAGCCAGGTGGATGCCAGGAACACAATGCCTCTTTTCTTTGCCCTACCCCGGCCTCCCCTGGACCTGCATCCACCCTGCTGTAGATTAGACAGTTCAGGCCAGTTGGCAAGTAGGTACATGTGCGAGTATGTGTGGACCTATGTGCAGACCATGCCTGCCTAGCACTGCTAAAACCTGTAATGGAGACTTGTCTCTGAACTTTTGCTATCCCAGAAAATGCATAGAAGCAAAAGCTGCTACAGGAAGTCTTTCCGGGTCTGCTCTGCACCAGGAGTACTAACCTCAGACCAAGGCTGTCTTACAGACACCCACTTCCTCACTGAGACAGGGCACACAGGTGAGCTCTGTCCCTGGCTGGGCTGGGCATCACCACGACACATCAGGGAATATTTCTGGAGGGAGGGAATAACTTCTTTGGGTCCAGCCTTCCTCTATAGGAACATGCATGGAAGTTTAGAAAGCTTTTAGATCTGGAAACTTCTGGGTTGGCCTGGCAGCTTCCACCCACGCTGCACATCTAAGGGTGGCCACACGACTACCCTCACCCAATCTCTGTGTCCCAGGGGCTTGGTGCAAGCCTGGCATACACTTCTCTGCCCAGTCTCTTCATTGATGGAGGACTCTGGCTCTTCACTGAGCCTGAGTTGGGGTTCATAGCCTTTACTCTGCTGTGACTGGGGACGGGCATGCTGCTCTGCCATCCCAGGGCACTCTGACTGCTCTGTTAGAGGGCCTGGGCCATCGAAAAGGGAAGGTTGAACCGAGGGCAGTTTCCATCCCTGCCATGAAGAAATGCTGCCACCTTGTGGTCGATGTAGGTCCGCCGTGTGGGCTGCTAAGAAAGACTGAGAAAAACAATAAAAACCCAATTCTCTGGAATACTAGTTCAATATTTCCTCATTGGCATAAAATTATGACCGGAGTATGTTCCAGCATTCTATTGCTGTGATAAAATACCATGACCAAAAGCAACCTGGGGTTGATTTGGCTTACACCTCCTGAGGAAAGTCTAGGCAGGAACCTGGAGGCAGGAGCTGATGCAGAGGCCACAAAAGAGTGCTCTTACTTGCTTCCCATGGCTCCCTCAGACTATTTCTTACACACCCCAGGCCCAGGGGTGGCACCATCCCAGCCGCCAAACTCTCCACACCAATCACTGACCAAGAAAATGTCCCTCAGACTTGGCTACAAGCCATCCCGCAGTTGAGGTTCCCTCTTCCCAGGTGACTCCAGTTTGTGTAAACTTGATCAACCAAACAAAATATAATAGCGCAGACCACGTCACCTTCTTTTAAAGCACTAAGTCTGAATTTTACCATGGATTTCGCCTTGCTGGTCTCAGGCCTTGGACATCCACAGCAGACAAGATGGAGGGGCTTTCGACGCTGCAGCAGGCCCTCTATGTTCTAAGGAGCTGTGAGTTCAGGCATCAGGGTCTCAGTGTGTGTTGTGGGTGGCAGGAGGTGAGGCAGCAGTTGTGATGATCCACGGTGTCTGTGGCTATGACACAACAGATGGCAAGATGGAGGGCCTCTGGGTAAGCTGCTCCTTCTTTTGCTTTGTGCATGAAAATCAAAGGCCTGGAGAGACTCACCCAGCTAGAAGAGGTGCGATTTCATTCTGTAGATGGCTGCGTAATCCCCAGACACATGGCCCTACTCTGGGTCCCTCCTCTGTCTCATTTTTTTTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCCCTCCTCTGTCTTATTCACTTCACTTTACCATGACAAGAAGAGATCTCAAGTTCTAAGCCCAGGAGCTGTGAATGGCTCTCACTTAAGAATAGGGTCTTTCTAGGTGACCTAAACCTGATGGTGAGCATTTTTAGAGGTAAAGTGGGGCTCCAAGAACAGATTGGAGTGAGGCAGTCATTAAGTCAAGGACACTGGGAAGCCTCAGGGACTGGGTGAGGCAAGGAGTCCTCTGTGGGCCTTTAGCAGGTGCGCACTGGTCACATTTTGCTCTGACTGCAGCATCCAGAGCTTTGGCAGGCGAATTTCCACTGCTGTTATCCACTTAGTCTGTGGTGTTTTGTCACGCCAGCTCTAGCAGATAGGTCTGTCATCTTTGGTGTTGTGGAAGCTTGGAAATAGTCGGGATTAACTTGGTGGTTGCTTGCCCCTGGCCACCCCCTTTGAGCCCTGATCAAGTGCTGTTGCCTGAGAGTGTTGTCACTGCAGTCAGTACTTCCTTCTACACACTGTGTGCCCAAGCTATGTCATGCAGACACACCCATGAGTTACCTCATTGTCCCCTCAGCTGCCCCATCAGACAGCATTACTGTTTTTCTCTCAGTGTTCAACAAGGAAATGGGCACGGGACATGTTAATCTCTGAATGTGCTTCCTCATCGGTGAGCCAGAGAGAATGGAAGAGATATGAAGTCATCAGGTTCTATCTTCTGATCCCTGAAGAGTGGTCCAATCTCAGGGGCGGGGGTCCTCGGCGACTTTGCAGAACAGCTTAGGTACAGCCAGCACCACCTTGCCTTAAGTTTCCCTGAGGCTGGCAGAAGACCCAGGGCTAAGTTCAAGTTGATTTTTCTATTCACTCTCATCAGGGTCTCACTGAGCGCCTAGGCTCCTACAGAGTGAGCCTTGCTGTGCACTGTATGAGCCTGGAGCTGCAGGAGCAAGGGGAGGTGACTGAAATCATCCCCTCGAGCTGACTGGCTTCCTTCCAGCATCCGCCTTGCTCTAAAGTCAGTGTAGAACAAGATGGTGCCCAGACTGTGAGTCCTGGGAATGGTATCTCTGGATGCAGTGGCTCACAGGGCCCTGCACAGGGTGGAAGTCACACCGGGTCCCCCAGGGGATCCCTTCTCCTGTCCCAACATTGCAGATCGTCTGGGCTTCACTGACAGCAGATGATGGTACCATGTTCTTGGCAGAGGTCAGGTCAGTTTCCCTTCACTGTTCTCGACAGTGTTGACACACTGTGTCCTCTTCTGCTGTGAGTGGTGAGGGCACATGTCTGGGACACAGAGCTTAGCAGTCTTCTGAGCAGGATCAGCCAAGTGCTTTGAGATCCCTACATGAGGAAATCAGAGCCTTAGGCCACTTGCATGTGCAGCAGGGGGTCTCGAGATGCCCCCTTTGCCTGCTTGTGATCATTCCACATGTGTTGTAGTGGATTTGTTTTCAGGGGTGGGCACCTGCTCTCTTTTCTATCAGGGTAGAGGCTGTGGACCTTCCCAGGGGTACCTGCTAAGGACATTCACAGGACTTGACCTATTGTGTGCGGCCTGGAGCAGAGATAGTGGGGACAGATATTATTAACTGTGGGATGTTGTTCTTGGGTCACGTCATTGCTAGATGTGGGCCAGCATCTAGAACTTTTATAATGTATCCCAAAAGTGATTATTATAAGCCTCATATAAAAGACTCATAAGAATAGTAAAGTGAGACTTGCCCAGGCTCCCACTGCATGGGTAGGTGAATCCAGAGGCATCCACGCCAAAGGCTGGGCTCCTCTGTTCTCCGCTGCACTGACTCATGGTCAGGGCTCTTTACAGCATGGCTAGTGTAAGGAGAGGTGGATGTTCTGGAGTACCAGGGGCCTCTTGTGGCCTGGTACTCACCAGATCTACATCGTAAGAGAGTCTGTGTGAATCTCCCTGATAGTTGAAAGGGTAGAAACTGGGTGTGCCATGCACTCCTGTAATCCCAGCATCTGTGATGAAGGGAGGAAGGGCAGGAGTTCACGATCATCTGCAGCTACAAGGAGCATACAAGACCACCTGGGCTACAATGGAACCCTGTCTCAAAGCAGCAAACCCAAGCCCCCAACTCAAAGATATTAAAATCCTCAGGTGTCCTGTGAGTGCCGGGCAAGGGTATGGTGTCTCCAATGCTGCCCGTCTTATGAGAGCCTGGGAGTAGGATCCTAACTGAGGCAGCCTGGCACATAGTAGGTACACTGAGCACAGTAGGTTTGGGTAACCAAGGTAGGGCTGAGTCCTTGCTGTGTTCTCTATAGGTGACAGGCATAGGTGGCTTGCTCCTGTGTGCATGACTTTAGATCTTGAGGAAAGTCTATGGGTGCCGTGCCCCTGCCAGGCTCCTGGACACTGCCAGGTTCCATCTTCAGAGGACGGAGGACAGGCATTTGCTATGGTCCCTAAGCCAGCAGGGTCCGTCTTCCTTTCCATGCATACACACCTGCTCCTGAGAGACTCCTCTTTTGGCTATGGTCATTCTACCACACTTTTGGCCCTTCCTGGCACAAGCCATCAGAGTGCTTCCTGACCCTACACCACGGCCGGTCCAGTTTAGACCTGATGCAAAGTTTCCTCCTTGGCTCCTTCTCCTTGTACACAGGATGCCTATCAGGTGCTTGACTGAATATGGCTGCTGGTGTTCATGGGGGTTTTATGGCCCCTTCTGAATCTTACTGTGGAGCCCATGAGGCCTGGCCCCCAGGAGGCTCTTGAGACCCCCCAGTTGCAAGGATAGTTTTGTGTCTTTTTTTTGCTAAAAAGGGGGTCCCAAACTCACACAGCACTGAGACCCCATATTCCTTCAGTGTTCTTTGGGACTAGGTAGCCTGCTTGGATGGCTCCTTGAATGACGCTCAATTTGAGTACAGGGTGGTGGGAGCCATGGGCACAGTCTGAGGCTGATGGCTCAGGACACTGTGGGAGCTGATGCACAGCTGGCTCTGGGGATGTGCGGGCAGAGGGCCCTCCAGGTTGGTTCCAGGCTGGGCTGGAGCAGTGCCAGCACAGCCACTTTCTTAGGCAAGCCCTATGATTTGTCAGACTCTGGCTGCTTCGAGCTCAGGTCAGCAGTGCAAACCAGGGGCATGAAGGTAACAGAGGATAAGACAGGGCTTGTCATCAGTGAGTGCCCAGCAAAGGCAGTGAGGGGAAAGGTGTGTACCATCATCTGTCGCTAATCAGGGTTGTCTCTTTTCCCAG
Seq C2 exon
GTAAATGTCAGAGACTGGCCTCCACACACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008947:ENSRNOT00000012109:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.076 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]