MmuINT0041947 @ mm10
Intron Retention
Gene
ENSMUSG00000036596 | Cpz
Description
carboxypeptidase Z [Source:MGI Symbol;Acc:MGI:88487]
Coordinates
chr5:35519081-35525698:-
Coord C1 exon
chr5:35525433-35525698
Coord A exon
chr5:35519114-35525432
Coord C2 exon
chr5:35519081-35519113
Length
6319 bp
Sequences
Splice sites
5' ss Seq
CCGGTAGGG
5' ss Score
7.63
3' ss Seq
AGGGTTGTCTCTTTTCCCAGGTA
3' ss Score
8.46
Exon sequences
Seq C1 exon
GAATCCCTTCTCCAGTGTCTGGCGCTGCCGGTTGTAACCCGACTCCTGAGCCCGCTCCTCACCCCTCCCCCCCTCCTCAGCCGAAGGGCCCAGCAGCGCCTCTCGCGCTCCCCGAGTGCCACATCACTGCGCCCTCCCGCGCATCCGTGCATCTGTGCCCACCATGCCGACAATGCCGCTGCTGCTGGCCGCGCTGGCTGCGCTGGCCGTGCTGGCCCTTGCCGCGCGCCCCAGCCCCAGCTGCTCGCCTGGACCCGACCCCTCCG
Seq A exon
GTAGGGTCCCAGCCGCCCCTGTGGGTAGATTTAGATACCCCTTTCTCCAGCCACCTGGGAACTTTTCTCTCCTTGTAGGTCGCATTCTGTCACCTGGGTAGAATATCCTGAAGGTGCCACATTGAGACCTTAGCCAGTACAGAAAACTTTGCTGGGGCACTGAGCTGTCTCAGCATCTGAGCCAGAGACCCCGGGGGAGACGGTTCGGCTGCAGGCATCCAGCACCGCCACGGCAGAGCAGGCACCTGGCCTGGTGGGATCCGAAAGTAGGTCAGAGTGAGCAGGTGCCAGGACTTCAGGACAAGGCGGTCTGAGTCCCCTGTCCTTCCAGGAATGGGTAGGTGCTGGCCACAGCAGACTCCTGACTTCAAAACTCCTGGCTGCAATGAGGATAACTTTTTATTTCCGGAAGTAGCCCTGAGAAGGGTGGAATGTTTCGGCAGGGATAGGACAGGGAGAAGGAGGGACACCCAGGGATCACAACGGAGGGTCCTGAGGATGGGTTTGGAGTTCTGGACTCCGTTCTGGTGCCTCTGCCCCTCCAGAAGTTGGGCTCCAGTTTCCCTCTTATTTGGTTGGGGATACATTTAGTTCACATCCTTTATGTCTTTATCAACAACAGCCACCTGAGTCTAGTCGGAGCCCCTAGGGTCTTTGGAGCCCATGGTATCAGCTGTAGAATTTTAAGAGCTAAGATTTGTGGTCACCTGAGAGGCTGTCTGCTCCAGCTACACAATGCCTCTTTTCTTTGCCCTCAGCCTGGGGCTTCCTCCCTACCCTTGGCCTCCCCCAGCCCTCTATCCATCCTCCTGTAGGATAGACAAGTAAAATACAGGTCAGTGGGCAAGTGTGTACATGTGCAAGCATGTTTGGGCCTGTGTGCAGAGCATGGCTGTGGAGCGCTGCTAGAACTTTCAGTGGAGGGCCTTTCTCTGAACCTTTGGTATCCCAGAAAATGCATAGATTCAAAACCTGCTACAGGAAGCCTTTCCTGGCCTGCTCCGCACCAGGAGTACTAGCCCCAGCCCAAGGCTGCCTTACAGACACCCATTTCCTCACTGAGACAGGACACGCAGGTGAGCTCTGTCCCTGCCTGGGCTGAGAACCACGACACATCAGGGAATATTTCTGGAGGGAGGGACAACTTTGGGTCCAGTCTTCCTCTATAGGCACATGCATGGAAGTTTAGAAGGCTTTCAGATCTGGAAATTTCTGGGTCAGCCCGGCAACTTCCACCCAGGCTGCACGTCTAAAGGTGGCCACACACCCCACCTTCTCCCTATCTCTATGTCCCAGGGGCTTGGAGCAAGCCTGGTGGACACCTCTCAGCTCAGTCGTTTCACTGATGGAGGACTCTTCATTGAGCCTGAGTCTGGGTTCACAGCCTGAGTCCTTTACTCTGCCGTGATTGGGGGCAGGCATCCTGCTCTATCCCAGGGCGCTCTGACCACTCTGCCGGGCAGTTGAAAAGGGAATGCTGGACTAAGAGCAGCTTCTGTCCCTGCCTTGAAGAAATGCTGCCACCTTGTGGGTGATGTTGGTAAGCCATGTGGACCGCTAAGAAGGAAAGAGAATAATAATGTAAAAAAATCCAATTATCTGAAAGATTACCTCAATATTTCCTCATTGGCATACAATTATGACTGGAATATGATCTAGGTTGCTTTCTATTGCTGTTGTAAGTCACCTCAACCAAAAGCAACTTGGGGTCTGTTTGGCTTACACCTCCTGAGGGACATTAAGGCAGAAACCTAGAGTCAGGAGCTGATGCAGAGACCACAGAGGCATGCTGCTTACTGGCTGGCTTCCCATGGCTTCCTTAGCTTATTGCTTACACACGCCAGGCCCACTCGCCTAGGGTGGCACCGTCCCCAGTTGCCAAACCCTCCACATCAATCATTGACTAAGAAAATCGTCACATTGCCTACGGGCAATCTGATGGGGGCCATCCCTCCCTCAGTTGAGGTTCTCTCTCCCCAGCTTGGGTAAACTTGATCAACAAAACAAAACATGATATCACAGAACAAGTCGCCTTCTTTTAAAACCACTAAGTCTGAATTTTATTGTGGATCTTTCCACTTACAGTGGCGGCTGGTTTCTACTTTCTGGTCTTGGGCCCTGGACACCCACATTCAGTGTGTGGCTATCAGACAGGATGGAGTGGCTTTAGAGTCTGCAGCAGGCTCTATATATTCTAAGGAGCTGTAGGTTCAGGCATCTGGAGTTTTTCAGGATGTGTTGTGGGCGGCAGGAGGTGAGCGGGCAGTGGTGATGAGCCACAGTGTCTATGGCTATGACACAACGATGGCAAGATGGAGCGCCTTTGAGTAAGTAGCTCCATCCTTTGCTCTGTGCATGAACATCAAAGGCCTGGAGAGACTCGCCCAGCTGGGGGAGGTGCTGTTTCATTCTTTAGATGGCTGTGTAATCCCTTAGGCACATGGCCTTACTCTGGGTCCCTCCTCTGTCCCACTTCAACTTTACCATAACCAGAAGAGATCTCAAATTCTGAGCTGCTAATGGATCTCCCTTAGGGATAGGGTCTTTGATGCTGACCTATACCTGATGGTGAGCACTTTTAGAGGTAAAGTGGGGTACCAGGCACAGATTGGAGCGAGGCAGTCATAAGTCACGGACACTAGGAGACTTTGGAGCTAGACAAGGCAAGGAGTCCTCTGTGGCCCCTTAGCAGTTGCACGCTGGTCACACTTGGCTCTGACTGCAGCATCCAGAGCTTTGGTGGGGTGAATTTCCACTGCTGTAACCCACTTAATCTGGGGTGTTTTGTCATGGCAGCTCTAGCAGACGGGTCTGCCATCTTTGGTATGGTGGAGGCCTGGAAGTAGGTGGGGGTTAGCTTGGTGGTTGCCTGCCCCTGGCCACCCCTTTGAGCCCCGATCAAGTGCTGTTGCCTAAGAGGTCACCTCCTTCTACACGCTGTGTGCCCAAGCTATGTCATACTGACACACCCATGAGTTACCTCATCTTCCCCTCAGCTGCCCTACCAGACAGCACTACTGTTTCTCCTCAGTGTTCAACAAGGAAACAGCATGGGGCACGTTAATCTCTGAATGTGTTTCCTCACCTGTGAGCCAGAGAGAATGGACTGGTGATGAAGCCATCAGGTTCTCTTTCCTGATCCCTGAACTGTGGTCCAATCTCAGGGCTGGGGTCCTCGGTGGCTTTGCAGAACAGCTTGGGTACAGCCAGCACCTGGTGGCCTTGCCTTAAGTCTGCCTGCAGGTGGCAGAGGACTCAGGGTCAAGTTCAAGTTGATTTTTCTACTTATCCCTCATCACGGTCTCACTGAACACCCAGGCTCCTACAGAGTGAGCCTTGCTATGCACTGTGCGAGCCTGGAGCTGCAGGAGCAAGGGTGGAGCAGTGTGTGTGACTGAAAGCATCCTCCTAAGCTGACTGGGTTCCTTCCAGCATCCACCTTGGTCCAAAGTCAATGTAGAGCAAGCAGCAGCCAGACTGTGAGTCCTGGGGGTGGAATCTCTGGATGCAATGTTTCACAGGGCCCTGTACAGGGTGGAAGTCACACCAGGTCCCTCACGGGATCCCTCCTCACGTCCTGACATTGTAGATCGCTTTGCTTCACTGACCGCAGATGATGCTACCCTGCTCTGGGCAGAGGTCGGGTCAGTTTCTCTTCACTGTTCTTGACAGTGTTGACATCCTGTGTCCTCCTGCTGTGGGCCGTGAGAGCACATGTCAGGGACACTTAGAACCACAGAGTTTAGCAGCCTTCTGAGCTGGGCCAGCCAGGTGCTTCGAGATCCCTGCATGAGGAAGGTAGGGCCTTGAGCCATGTGTATGTGCGGCAGGGGGCTTGACCCCCCCCCTTTTGCTTGCTTGTGCTCAATCCACACATGTTGTAGTGGGTTTGTTTTTAGGGGTAGGCACCTGCAGACTTTTATATTGGGGATAAAGGCTGTGGTCCTCCCCAGGGGTACCTGCTAAGGACATTCACAAGACAACCTGTTTTGTTAGTTTGGCCTGAAGCAGGGACAGTGAAAACAGATATTGCTAACTGTGGGATGGTGTCCTTAGGCTACATCGTTGTTAGATGTGGGTCATCTTCTAGAACTTTCATACTATATTCCTAAAGTGATTACTATAAGCCTCATATAAAAACCCATAAGAATAGAAAAGTGAGACTCATCCAGGCTCCCGCTGTGTGGGTGGGTGAACCCGGAGCCACCCGGGCCAGAGGCTGGGCTCCTCTGTTATCCACTGCACTGACTCATGACCTGGGCTCTTTACAGCATAGTGAGGAGGAGGAGGGAGAGGAGGAGGAGAGGGAGGAAGAAGAGGAGCAGCAGGAGGAAGAGGAACAGGAGGAGGAGAAGGAGGGGAGGGAGGGGAAGGAGGAAGGGAGAGAGGAGAAGGAGAGGGAGGAGGGGAGGGAGGAGAAGGAGAGGGAGGAGGAGAGGGAGGAGAAGGAGAGGGAGGAAGGGAGGGAGGAGAAGGAGAGGGAGGAGGAGAGGGAGGAGAAGGAGAGGGAGGAGGGGAGGGAGGAGAAGGAGAGGGAGGAGGAGAGGGAGGAGAAGGAGAGGGAGGAAGGGAGGGAGGAGAAGGAGAGGGAGGAGGAGAGGGAGGAGAAGGAGAGGGAGGAGGGGAGGGAGGAGAAGGAGAGGGAGGAGGAGAGGGAGGAGAAGGAGAGGGAGGAAGGGAGGGAGGAGAAGGAGAGGGAGGAGGAGGAAGAAAAGGAGGAGGAGCAAGAGGAGGAGGAGCAGGAGGAGGAAGAGAGGGAGAAAGAGAGGGAGGAGAAGGAGAGGGAGAAGGAGAGGGAGGAGGGGAGGGAGGAGGAGCAGGAGCAGGAGGAAGAGAAGGAGGAGGAGGAGCAAGAGGAGGAGGAGCAGGAGGAGGAGGAGAGGGAAGAAGAGAAGGAGGAGGAAGAGGAAAGGGAGGAGGAAGAGGAGGAGGAGGAGAGGATGTCCTGGAGTACCAGGGGCTTCTTGTGGCCTGAGTACACACCAAGATCTACACCATAAAAGAGTCTGTGTGACTCCCTGATAGCTGAGAGGGTAGAAACTGGGCATGCCGTGCACTCCTGTAGTCCCAGCATGTGAGAGAGAGGAGGAAGGTAAGGAGTTGAAGATCATCTGCAGCTACACGGGGCATACAAGATCACCTGGGCTACAAGGGACCCTGTCTCAAACCACCAAAACCAACTCCCTATCTCAAAGATATTAAAAACCTCAGCTACCCTCTGAATGCCGCAAGGGTATGGTGTCTCAAATGCTGCCTGTCTCACAAGAACCTGGGAGTAGGATCCCAAATTGAGGCAGCCTTGCACATTGTAGGTATACTGTGCACAGTGGGTTTTGGTAACCAGGGTGGGGCCGAGTCTTTGCTGCTTTCTCTCTAGGTAGCAGGCATAGGTGGCTCACTCCTATGTCCATCTGCTGCATGACTTTAGATCTTGAGAGAAGCCTATGGGTGCCATGCCCCTCCAGGCTCCTGGTCACTGCCAGGTTCCATCTGCACAGGACAGAATACAGGCATTTGTTGTAGTCCCTATGCCAGAGGGTCCATCTCCCCTCCCATGCAGGCACACCTGCTCCTGAAAGACCCCTCTTTTGGCCATGGTCATTCTACCACACTTCTGGCCCTTCCCTGCACAAGCCATCAGAGTGCTTCCAGATCCTCCACCAGCGCTGGACCAGTGTAAACCTGAGGCAAAGTTTCCTCCTTGCCTCCTTCTTGTGCATAGGATGCCCAACATGTGCTTGACTGAATATGGCTGCTGGTGGTCATGGGGGTTTTATGGCTCCTCCTGGATCTTACTGTAGAGTCCATAAGACCTGCCCTCAGGAGGCCCTCAAGACCCTGCAGTTTCATGGATAGTTTTGTGTGTTAGTTTATGCTAGAAAGGGGGTCCCAAATTCACACAGCACTGAGGCCCCATATTCTTTTGGTGTTCTAAGGACTAAATAGTCTGCTTGGATGGCTCTTTGAATGATGTTCAGTCCTGAGTATGGTGGTGGTGGAGGCCATGTGCACAGTCTTAAGCTAATGGCTCAAGACTCTATGGGGGCTGATGCATGGCTGGCTATGGGGATGTGGGCACAGGGCCCTCCAGGTTGGTTCTAGGCTGGGCTGGAGAGTGCCAATGCACCCACGTCCTTAGGCAAGTCCTATGGTTTGTCAGACTCTGCTGCTTTGAGCTCAGAGGTCAGCAGTGCAAACCAGGGGGGTGAGGGTAACAGAGGCTAGAACAGGGCTCATCATCAGTGAGTACCCAGCAGAGGCCTTGAAGGGAGAGATGTGTACTGTATCTGTTGTTAATCAGGGTTGTCTCTTTTCCCAG
Seq C2 exon
GTAAATGTCAGAGGCTGGTCTACACACACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036596:ENSMUST00000038676:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types