RnoINT0041826 @ rn6
Intron Retention
Gene
ENSRNOG00000025498 | Crb2
Description
crumbs 2, cell polarity complex component [Source:RGD Symbol;Acc:1309368]
Coordinates
chr3:22055310-22056699:+
Coord C1 exon
chr3:22055310-22056087
Coord A exon
chr3:22056088-22056582
Coord C2 exon
chr3:22056583-22056699
Length
495 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
3' ss Seq
GGCCTTTCATTTCTCTGCAGGTT
3' ss Score
10.52
Exon sequences
Seq C1 exon
GTGTGGCCGAAGCCACGTTCCGCGAGGGCCCTCCTGCTGTGTTCACAGGCCACAACGTGTCCTCATCGCGCGCGCTCAGCAGGGTCACCCTGGCCTTCCGCACACGCGACCTGGAGGCTGGGCTGCTGCGCGCTGCCTCTGCCGCGGGTGCCCACTCCAATATCTGGCTGGCGGTGCGCAATGGCTTGCTGGCAGTAGATGTGGCGGGCTCGGTGCTGCCGGCGCCCGGGCCGCGCGTGGCTGACGGTGCCTGGCATCGCGTGCGCCTAGCCCGGGAGTTTCCACAGGCCGCCGCCTCACGCTGGCTGCTGTGGCTGGACGGCGCGGCGACACCCGTGGCTTTGCACGGCTTGGGCGGCGACCTGGGTTTCCTTCAGGGCCCGGGTGCCGTGCCTCTGCTACTGGCCGAGAACTTCACGGGCTGCCTGGGCCGGGTGGCGCTCGGCGACCTCCCCTTACCCTTGGCGCCACCGCGGTCCGGCGCGATGTCTGGGGCACGCGAGCACTTCATGGCTTGGCCTGGGTCTCCGCCGGCAGTGAGCCTAGGCTGCCGGGGCGGGCCAGTATGCACGCCCTCGCCCTGCCTGCACGGCGGTGCCTGCCTCGACCTCTTCGACGTCTTTGCTTGTTCCTGCGGCCCCGCCTGGGAAGGACCCCGCTGCGAGATCCACGCTGATCCATGTCGCTCATCGCCCTGTGTCCGGGGCCAATGCAACACGCGCCCGGACGGCCGCTTCGAGTGTCGGTGCCCTCCGGGTTTCTCCGGCCCGCGCTGCAG
Seq A exon
GTGCGGAAGGCAAGGGGACTTGACCTGAGGATAGCTGTGGCAGTGGGTACTGCTGACTGCTGATTTATCATGGGTAGTTTGGAGGGAATAAGTTCTCCGTAGCTAGTTCAGTTTGGTGCCCATAAACTACTACAGGTTAAAATTTGAATTTCAGGACAACATTATGGTTTGGGGAGAATTAGGACAGAACTAATCAGGGAGCATGATTTTGGAGCCTTGCAGCAAGCTACCTTAATGATGTTGTTTTTGCAACTCCATTTCCTTCTGGTTCCAGAGCTGTCTAGCCCTGGTCTATCTCTCCTCCCTCCTTCAGTTTAGGAACTGTTTTGCACTGTCCTTTAATGTCAGCACTTATCAAAGGCCTCAGATCTTGTGGGGTTGTGTGGGGAGGGGGGAGATAGCAGAGTGACAGCCCTGTATTCCTTTGCTTCCTGGGGAAGGCTGCTGCACGATGGCCAGCTCCCAGCACCTCACCGGCCTTTCATTTCTCTGCAG
Seq C2 exon
GTTGCCTACCTTGCCTCAGGGGTGTAGCCTCAACTCCACCTGCAAGGATGGTGCCCCTTGTGGGGGTGGCCCCTTAGGCACTAACTGCAGTTGCCAGGAAGGCCTTGCTGGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025498:ENSRNOT00000037257:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=WD(100=45.8),PF0000822=EGF=WD(100=11.9),PF126612=hEGF=WD(100=5.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTCCCCTTACCCTTGGC
R:
TACACCCCTGAGGCAAGGTAG
Band lengths:
358-853
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]