RnoINT0043147 @ rn6
Intron Retention
Gene
ENSRNOG00000030790 | Ctnnd1
Description
catenin delta 1 [Source:RGD Symbol;Acc:1305643]
Coordinates
chr3:72006427-72009796:-
Coord C1 exon
chr3:72009709-72009796
Coord A exon
chr3:72006490-72009708
Coord C2 exon
chr3:72006427-72006489
Length
3219 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTA
5' ss Score
7.26
3' ss Seq
AACTTTCTAATTCCATATAGATA
3' ss Score
6.35
Exon sequences
Seq C1 exon
GTGAATCTAAACAATGCATCTAGAAGCCAGAGCAGCCATTCATATGATGATAGCACTCTCCCCCTCATTGACCGGAACCAAAAATCAG
Seq A exon
GTATTATAACCAAGGGGTGCAGCTTTCTCTGTTTAGTGCTCCTGGCATTCTTTAATGGCTTATTAACTGAGAAATAGGATATGTGTTTATTTCTAATTAAGCTAGATGCCGAGTGTGGGAGTAATGCTTTGCATCCGGATTGTACTGTGTAAGAGAATAGGTTTGAATTTAGAAATCAAACAGGTGTGGTGGTGCACACTTGTAATCCCAGCCAGCACTCTGAGGTGGCAAAAGGAGGGTCAGTAATAGGTCAAGGCCAACCTTGGCTACATGACACTCTGTCTCAAGGGAAAGTAAAACCAAAATCAAGGTAGTTAGTAGCGTGAAGTGCGGCTTTTTTTTTTTTTTTTTTTTTTCTGTCACAAATAAACTTTTATCAGGGAACTGGGGCAGGGTGATCAGAGAAGGACCTGAAGTGGGAAAGAGGAAAGGAAAGGGGGTGGCTGGGTGGCTGGTTGGTTAGAGTGTCCTAAAGGACAACCACCTCCAGCCACCGAGTGTGGCTTCTTTAATTTGCCTGCGAACTTCAAGTTACTAGAGGGTGAATCAGTTTTCTGTTTAATCTCTCTCTTAAATTTCTGTTCTACTGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGGAAGTGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGATACTTATTAATGTGCTTGGTTAATTATTAGTGCTTTTCTAGTTGGAAAAAATAAAAACTACTGACAACCAGAAAGTCCATTATTTCTAGTCCCTAGAGAAAACACCACCGCTATAGCTCTGTGTGTGTGTGATTGTGTTTTTGTGTTGCTGTGGTACTGGGGACTGAATCCATGTCTTTCTTGGCAAGTTTTTTTTTGTGTGTGTGTTCCCTGAGGTAGAGCTTTTTAAACCACTTTATCATAGATGAATTATATATTTAGTATTTTATATATTTGTTTCACTAAAAGTATGTACCGTAACCTTTCTTATCTTACGGCTTTTACCTTTTGATTCCACCCATGGCTTTTGGAGCATGGCGTGAGAGCCCCAAGATTCTTGGACATATGCACTGATGACATAAAAGCAGCGCGTGCTGCCGGGGCCAACACAGATGGAGATGGTGACACTGACCTGAACTAGTTGGGTTTACTCCCATGCACTCCTCAGTTAAAAAGCCATCTCCATTTAGGAGCATCCTTGATGGAGCTGTAATATTTTATTATATTTCTACCCTAAGTACACATCCCCTAGATGTGTAGTGTTAATGAGGAAATGTGAAGCTCTTGTGCTGCGCCACAGGGAGCCACTGTGATTATCTTGAGGCAGACTACTGGTATTACTAATTAGACTAGCCAGTTTTTATAGAGTACTATTTTACTTAATGAAGTAGCTGACACACAAGTGATGATTATTTCAACATGGTTATTTGGCAAGCATTCCCTCAGAAATAAACACAGAAACTTTATTACTTTGTTGAAAAAACTGACAGTATTTGCTACCTGAGTGAAAAATATAATTCTGGCTGAGTGTAGTGTCTCATCCCAGCACTTGGAAGGCTAAGGCAGGAAGATTGCCCTTCATTTAAAGCCAGCATGGGCTACATAGGGGGTTCAAGGCCAGCCTGAGCTGTAGAATAAGACCCTGCCCCCTGAAAAAGCCTCAATAAACCCCAAAATCCGAAAGAAGAAAAGTATAATTGGGAAAATCATACCCATGTTACTGAGCCTAGTAACATCCCAATACTTAGAAGGCTTTTTCTAGGGCCATCAAGGTGGCTCAGTGAGTAAATTCACTCGCCAGTAAGCCTGACACCCTGAGTTCATTCATGAGAGAGAACTGACCCCTGAAAGTTGTCCTCAGACCACTGTATCCGTGTCATGCTATGAATGGACACGGATACATGGTCGCTCTCTCTCTCCTTCTCTCTCTCTCTCCCTCTCCTCTCCCTCTCTCCCTCCCATGTGCACATTCATACCCATGCGTGCGCGCGCACGCACACACACACACACACACACACACACACACACAAAGTGTAATAATAAAACCATTTTTATGGCTTTTATGATTATATAAGTCAAGATAAATACACATGTATAATAAAATGTGTTAATTTTTACAACATTTGCATAGTTCTGTAAACTGTTATTTTGCAGGGAGACAGTACCAATACTTTTCAAAAATCTGTGTATCTGTATAAGTAAATGCCATACAAGGGCAAGACAGACTACCCCATCTACTTTCTGTGGGTTTCTTGAGGCAAGGTCTTACCATGGGCTCCACAGTTGCCTGGACTGGGAACTTACAGTGACCCCTACCTCTGCCTTCTAAGTGCTAAAATTATGAGACTAAGTTCTACTTCTATCTCTTCTATTAACCCAGAGTTAAAAGAGGTATATAAAAATGTTCAACAGTGTTCCCAACCTTGGATTTTTATTTTAATTTAAAAATTAATTATTGTCTGTGATGTGTGTCGTGGGCACACATATGGTGGCCTTCAAGTGGAGGTTAGAGGGCAACCAGGGAGCTTGTTCTTGTAGTTATATCTGGTCTCTAGGATCAAACTCAGGCTGACAGGCTTGCACAGCGAGTGCTCGAGCCCGTTAACCACCTTAGCGGCCCCCACACAATGCTTTTTAAATTGAAAGTGCTTATGATTATGGAAAAAATATTTTTATGTGGAATAGATGTTTCCATTTCTGAATATAGTAAAGTCTGCTTATTCCACGCCAATGGAAGTCATTTCCTACACCCTCATTCACCTCATATGTGAGAAGACTAGGCAAACGCTTCATCTACTGTTGAACTACATCTTTAGCCTAGAACCTTGCAATCTTTAAGACTAAAGGGGCTTTGAGATGTAAGGGCCCATATTGTTGAAGGTCCCACCCCCCATTTATTTCTTTGTTTATTTAGTTTGGGTGTGAGGTCAGAGGAAAACTCGAAGGGCTCAGTTTCTTCACAGGTTGTTTCCAGGGATGAGACTCAGGCCATCAGGCTTGACAACAAATGCCTCTGAAATGTTTCTTGTATTTGGGTGTCTATAGGAAAGGGACCAGAGTTCTGCAAGGGCTTTCCTAGAACCGTAGGTTGTGATTAGTCTTGGCACATAGTATGTGCTGAGTAAAACTGTATTGAATAAAGGCAAGGAAAGATGGCATGCTAGAAAGAAATGTCTACTTTATACAGATTTTGGTGTATTGCATTTTGACTTGGATAACTTTCTAATTCCATATAG
Seq C2 exon
ATAAGAAACCTGACCGGGAAGAAATTCCAATGAGCAATATGGGGTCAAACACAAAATCATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030790:ENSRNOT00000064009:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]