RnoINT0044311 @ rn6
Intron Retention
Gene
ENSRNOG00000021924 | Cyp2c22
Description
cytochrome P450, family 2, subfamily c, polypeptide 22 [Source:RGD Symbol;Acc:620368]
Coordinates
chr1:259260830-259264268:-
Coord C1 exon
chr1:259264081-259264268
Coord A exon
chr1:259260972-259264080
Coord C2 exon
chr1:259260830-259260971
Length
3109 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TTTTGCTCTCTTTCTTTCAGGGC
3' ss Score
13.78
Exon sequences
Seq C1 exon
CTAAAATTCAGGAAGAAATTACTCGCGTGATTGGTAGACACCGGAGACCCTGCATGCAGGACAGGAACCACATGCCCTATACGGATGCTGTGCTGCATGAGATCCAGAGATACATTGATTTTGTTCCCATTCCCTTGCCTCGTAAGACAACGCAGGATGTGGAGTTCAGAGGATACCACATTCCCAAG
Seq A exon
GTGAGATGCATTTCCTTGGTGCTCCTCATTGGTCAGTTTGCCTGTTAATAATTAAGTAATGTGATTACAGATAGCTTGTCCTTCTAGAAGGGTTCCAGAACTATATCCCAGGATCCCAGCCCTCTCACTCTATGCTACTTTGCCTGACTTTTGTTGATATGGTTTTCTAGTATGGTTGCATTCTCATGAACTTGTCAGTTCCCTGATATTTGATAATTCAATCTGCTGTCCACATCCTTGCTTTTGCTTAGTTTTACTATTTTCAATTAACCACAATTCTGTATTTCCATCTCCCCCAATATTTTCTGTTTGATTTACTTGGGAGAAGTACAATCTAACTATCTTTCCTCTTCCTTGCTTTGGGGGAACTCACTTATGAAGTTCAGTAAGTTGGTATTATACCTTATACATTGGTATTGTTTTTATATACATATCAGTCTACATAATTTATTTGGAGACTAGATTTTAATTTGGACTTCAAAATAGTATTCCAGCTCCAGCCTCCTAAGCAGTGGAGATTATAGGCTTGTGCTGCTATTTCCTACCTAGTTTTAACCAACACTTAGTATTTTATCAATAAAAAATCACTTTATTTCAATTAACTCACAAATTTAAAACGTCACACAGCTAATTTTGGCCCCACAAACTCATGCCTAGTCCTCATACTTGCTTAGGAAGCACTTTCTCCACGGAGCCATCTCCCTAGCCTCTACATTATTAATATTATTGAACATTGATTAACATTAGTTGGGTTCCAAGTTTGCTGGAGATAAAGACATAACATTTCTGTCTGAGATTGTATTGGTTAGGGGTATGAGGGAATGTTTTGAATAATTCATTAGACATTTTAATGTTTGACCCAAACATGCCTAGTGCATGATGTCTCTAGAGATGTTGGTGATCACACCCAGAAAGTTTAGGGCTCTCCTACTCTGGTCATTCTGCTTCTGGGATGTACCCTTCTCCCTTTCAGCTTCTGTGTGAGCCTTAAATGGGAAGCTTGTCACTTGTTTTCTAAGCAGGGAGAATAAAGCTTTATAGTCAAGATAGAGTCATTCAATCTTTCCCCCTGGAACCTGCCCTCTGGATAATACCACAATAACGGAAAACCCACTTTGTACTGTTTTCTTTTTTCAAGGACCTTCCATGTTCCAGAATATTTGTAGTTTTGCTCAAGTTTTACTCCACACACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTGAACTTGAGATCATCAGGTAGAATGTCTCAGCTGACTCCGGTTTACAGGTCTCTAAGTTCATGTCTTTATGCTTAGTCTTTTAATGCTTTCAATTTTGTGTAGTAACATTTCAATCAGATTTTTTTAAATTCTAGAATTTATGTCTTTGTTGTTTCCATTTATGAATACCTTGATATTCTGTAGTATTAGGCTATATTAATGGCATCCTCTGTGACTTAGAAAATGCCTCATCTCCTGTACATTCTTTGCAACGATTCCTTTGAGTGCTCAAATATATTCGTCACAGCTATAGTTAGAAGTTTTGTATGACTACTCTAAATCTAGACAAGCATATTTCCCTTTCACATTGGCCAAGAATTTTTCAGTCCCCGTGACTCTCGTTTCTCCCTTTTCATGGTGGCTCTGGGAGCTTCTTTCCAGCGGCTCACCTAATAGATATTGAAGAAAATGCCAAGGAGGCTTTGAAAATGACTCACATTTCATTCCAAAGTCAATGAAATTAATTTAATTTTCTTCTCTTATATGGAAATAGATATTGAAAATATATTTGGACCAGTTTCCCTTCCTCCAACTCCTCCCAGATCTCCCCACCTCCATAACTACACAAGTTTATACCTTTTATTTTTCCGATTAGATAATAAACAAGCAACTAAAAACAAAAACAAGACAAAACAAAAAAGAACCCAGTAACAACAAAAACAAACAAGAGTAGACCAAAAGAAACGGGAGAAAAAGTGCCAAAGCAAAAGCACATGAAAGACACCCAGATGGGGAGATGCACAAATTGCACACAGAAATACCATAAAACACAAAACCAGAAAGTATAATATATAAACTAAAGACCTAATAGTAAAAAAATGCCCAGAGAATGCATTAAAAGACAACAAACAACAAACAAACAATCAAACTAATCAACTACCAACAACAAAACCCAAAAACCACCCCACAACAAACCAAACCAAGAGAAACCCTCCCAGTTACCACTGAGAATTCTTTTTTCTGTTGGCTATCTTCTGCTTGGCAGCAGATTTGCCCTAAGTGGCATTTATTTTCCTAGTGAGATCCTGTTGGAAAACACTTTTTTTTTAACTAGTGCTTGCTAACTTGAGATAGCTTCTGGGTTAGGGTTGGGGCTTGTGTTGACTTTTCCTCTGGGCACTATGAACATATCTGACTTAGACCTGTGAAGGTCGTGGGCATGCTGCTATAGTCTCTGTGATTTGAATTCATACGGCATGAAAGTCCTCTTGTGTTTTTTTTTTTAAAAGAAGATTTATTCATATGAGTACACTGTAGCTGTTTTCAGACACACCAGAAAAGGCCATCAGATCCCATCACTGATGGTTGTAAGTCACCATGTGGGTGCTGGGAATTGAACTCAGGACCTCTGGAAAAGCAGCCAGTGCCCTTAACCACTGAGCCATCTCCCCAGCCTAAGTCCCCTTGTGTTTAGAAGGCCTTATTTCCTTGATGTTCTTCACCCTGCTGGCTCCGACAATCTTTTCACCCCCTCTTCCACTGAGTTGAGATGGATTTTCAGTTGTATTGCCCCGTGAGATGACAAGCTGAATAAGTATCAAGATTCATGCACTCCAAAGAGCACTTTAATTCTGCAACCTGCTGGCATCAGACCACAGACTAGTGAGGATGGCTGTGAAGTCAATGGACGGAGAGACCTTTAGTGAGCATTATAAGATTTAGAACTGTTAGGGCTGGTATTGATGTGCTCTCTTGACATGAAACAAATGACTTCGGTTTTCTATCTCAATCTGCTCGTCCCAGAGCTAAGAGATCAAAGGAGAGATGTCTGAATTGTTTTAAGATTCCATGTCCCCCTTCATAAATGACTTTTGCTCTCTTTCTTTCAG
Seq C2 exon
GGCACAAGCGTAATGGCATGTCTGACTTCTGCCCTGCACGATGACAAAGAATTTCCCAACCCAGAGAAGTTCGACCCTGGCCACTTTCTCGATGAAAAAGGCAACTTCAAGAAGAGTGACTACTTCATGGCTTTCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021924:ENSRNOT00000054724:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=NA C2=0.083
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.6=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]