RnoINT0044331 @ rn6
Intron Retention
Gene
ENSRNOG00000024016 | Cyp2c6v1
Description
cytochrome P450, family 2, subfamily C, polypeptide 6, variant 1 [Source:RGD Symbol;Acc:619934]
Coordinates
chr1:147808267-147811187:+
Coord C1 exon
chr1:147808267-147808408
Coord A exon
chr1:147808409-147810999
Coord C2 exon
chr1:147811000-147811187
Length
2591 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CTTCTACTGGGACCAACCAGCTA
3' ss Score
0.55
Exon sequences
Seq C1 exon
GAAAATCACAATCCACATTCGGAATTTACACTTGAAAACTTATCAATCACTGTGACTGATTTGTTTGCTGCTGGGACAGAGACAACAAGCACAACACTGAGATATGCTCTGTTGCTCCTGCTGAAGTGTCCAGAAGTCACAG
Seq A exon
GTAAGGACACAGGTGGTGAACCTTGGCATTCTCATTGTATGCTGGGAAGACGTTGTTGATGTCCTGTGTATTATTCTTAGAAAAGTCTGCCCTTGACTTTTTGTGCTACTGGCCAGAAAGTGTAGGATGAATGAGAGGAATGAAGAGACTGTCCACATAGGAAAAGAATGCTGTTAAGTGTCTGGGTTCTTTTGGAGATAATCTGGGAAAGGCACTTACAGCCTTCTTTGGCTTGCTTTGCCTATACATTTTTTGTCCCCAAATTAGGTTTTCAGAGCAGGCAACTTTTTGTACTTACCTTCTTTGTTTCTAATAAACCTAATTTTGAGGTATACAGAGGTGAAAACTTACTTCACTGAAATAAGCATGAATTCTGGAATTTCTGAGCTTATCTGAGATAATGTCTACTCTGAGAAGGAGTAAAAATAATAAATTCATTAGAAAGTTATTTCCATATAAGGCAATAGTTATAGAAAAAGGAATGTTATTATTTCAAATATCCATTTCCATGCAACCTATATTGCTCACACTTATTCCAGTTGTACCAGCAGCATTTATTTTAAAAATATTATTATAGAAAAGTTATTCTACTATTATTATTTTACAGTATTTATTAAGTTATCTATCATGCTTCTGAATAGGTCTGTATACTTAAAATTTAAGAAAAAAATATATTACTGGATAGAACAAAAGTTTCCCTATGACACTTATGTAGCCAGATAGCTTTAAATGTTACTATTGCACATGTGGTAAGTATGCAGTTTTAATGCTTTCATTAGTCTAACATCTGGAGATAGAAAAAAGGAAATAACAAAGTGCGACAGACGTTTTTCTTATATTATTGTCATCAGAGTAAATAGAGCATCCATAAGAACTGTCTTAATTTCTTCCAAAGGGGACGTGGTTCCCTCTGTTTCCTCTTAAAGGGGAGTGTGTACCCTGGAGAAAGCATCTGATTGTGCCAACCCAAAAGTTACTTTTAAATACATTCAATATTTTAGCATATATGAAGTTCACCTCTCAATTTTATGTAATTTACATTAAAGTGACTCTAGCAAAAATATGAATAATAATTAATAATTAAAGGGTAGGAGAAATGGAAAATGTCACATGATTAAGAGCTTCACAAAAATACTTAAATACAACAGTGTAATGAGGAACAAAGAAAAATGGGGCAGGGAAGATGACACTGTAACATAGATATCAGATGAACATGTAAACTACATTTCTACAGTTACAGTATGGATGTCGATTGAAAACAATAAGGAGCCAACATAGGGCTGTGTGTGTGTGTGTGTGTGTGTGTGTTATCTATCACCTTAATAAACCATTCTAAATACTCTGCAATGTGAAGAGAATGAAACCACTAATCCAAGAAACAGTCACAGAGTTTCAGAACATCAGACTAAATATAAGCATGACATCCTCTAGAAAGACCCCTGAGTCACATGTAAACACTTGCCTTGAGACTGCTAAGCAAAAATGTAAGCCTGGACTTCAGTATTCGTAGAAATGTGTCTTTTCTTAATGAAACACCTGAGAATATTTTTATCTACTTCTCTGAATCAGGGTCAAGGAAGTCATGGGCTCCAGGAATCAGAACAGCCCACATAGAAAGATAAGATAAAGGCTAGGTTTCTGGACACAAGACCTATAGAGATCTCTATTCTGTCTTTACCATGTGGATCCTGCATGCATGAACAAAGATGAGGGAAAAAGGAGAAGTAATATGTGGTCTGATGCCTACATCAACTGAGCTTTTATTTCAAGAGCTATGAATTTAAATACTTAGATACAATTTTAAACTCATAAAATGGAATATTGCAAACTAAATATAAATGACTAGTACTAGTAGAAGATGATCAAATTTTTCATGATGGATAATCATATTTATATACTGTCAATGAATCTCACAGTGAAAATTGGAATAACTAAATTCTGAAATCAAACACATTGTTCATGAAGTAACAGAAAGTGTGATGCTTGTGTTGTCTTTTTGAAGCTGTCTTTTAGCATATGGAATATAACTGTAATTCATGTTTTTCATTTTTCACAACAGAAGATATTTTATGTAATTGGCTGCATAGCAAACATTAATTATTGACAAATATGTTTATACTTCAGAAGCACTTGTTGACTTTGACGGTGACCTATTATGAACATTATATCCCACCAAATTTCTCTCTCTCTCTCTCTCTCTCTATCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACACAAACTAAAGATATTTTAAGATATATTTTTGACAAAAATTCAATGTTTGATTTCTAATTATCTTTTTCAGACTATGATATGACGGTTATTTATGTTGTTATGCTACTTGAAGTATTTACTTAATCCTTTTGTTCTTGTTATTATAATAATACATAGTGATGTATTTTAACAGCTATTAGTGAGATAGTGATATGCATCTATATATAGCATATCTGCATGCCTTAATGTACTCCTGGATATAAAATGCATTTGTAATGCTACTTTTGTGCATCATGTAGTCATGCATTGTGATAAACAATTTACTTCTTTCCCATTTCAACACTTCTACTGGGACCAACCAG
Seq C2 exon
CTAAAGTCCAGGAAGAGATTGATCGTGTGTTTGGCAAACATCGCAGCCCTTGCATGCAGGACAGGAGCCGCATGCCCTACACAGATGCCATGATTCATGAGGTCCAGAGGTTCATTGACCTCATTCCTACCAACCTGCCACATGCGGTGACCTGTGACATTAAGTTCAGGAACTACCTAATACCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024016:ENSRNOT00000054742:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=FE(13.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]