RnoINT0044356 @ rn6
Intron Retention
Gene
ENSRNOG00000029128 | Cyp2d5
Description
cytochrome P450, family 2, subfamily d, polypeptide 5 [Source:RGD Symbol;Acc:628630]
Coordinates
chr7:123618973-123619376:-
Coord C1 exon
chr7:123619224-123619376
Coord A exon
chr7:123619134-123619223
Coord C2 exon
chr7:123618973-123619133
Length
90 bp
Sequences
Splice sites
5' ss Seq
ATGGTGGGT
5' ss Score
6.18
3' ss Seq
CACTCCATCTCCACTCCCAGGGC
3' ss Score
7.64
Exon sequences
Seq C1 exon
GTGTGGTCTTTGCATCTTACGGGCCTGAGTGGCGAGAGCAGAGGCGATTCTCTGTGTCCACCCTGCGCACCTTCGGCATGGGCAAGAAATCCCTGGAGGAGTGGGTGACCAAGGAGGCCGGCCACCTCTGTGATGCCTTCACTGCCCAGAATG
Seq A exon
GTGGGTGATGGGTGAGGAATGCAGGTGTGCACAGGGAGATATGGGCAGTCCATTGATTTGCTTGTATCTCCACTCCATCTCCACTCCCAG
Seq C2 exon
GGCGGTCCATCAATCCCAAGGCCATGCTGAACAAAGCCTTGTGTAATGTGATCGCATCCCTCATTTTTGCCCGTCGCTTTGAATATGAAGACCCTTACCTCATCAGGATGCTGACACTAGTGGAAGAAAGTTTGATAGAAGTCTCTGGTTTCATTCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029128:ENSRNOT00000046024:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.1=100)
A:
NA
C2:
PF0006717=p450=FE(11.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCTTTGCATCTTACGGGC
R:
AGCATGGCCTTGGGATTGATG
Band lengths:
178-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]