RnoEX0025893 @ rn6
Exon Skipping
Gene
ENSRNOG00000029128 | Cyp2d5
Description
cytochrome P450, family 2, subfamily d, polypeptide 5 [Source:RGD Symbol;Acc:628630]
Coordinates
chr7:123618973-123619792:-
Coord C1 exon
chr7:123619621-123619792
Coord A exon
chr7:123619224-123619376
Coord C2 exon
chr7:123618973-123619133
Length
153 bp
Sequences
Splice sites
3' ss Seq
ACACACAGATGTGTTTGCAGGTG
3' ss Score
4.47
5' ss Seq
ATGGTGGGT
5' ss Score
6.18
Exon sequences
Seq C1 exon
CTTCAACACCGCTATGGTGACGTGTTCAGCCTGCAGATGGGTTGGAAGCCCATGGTCATTGTCAACAGACTGAAAGCGGTGCAGGAAGTGCTGGTGACTCATGGAGAGGACACTGCTGACCGCCCTCCAGTGCCCATCTTTAAGTGCCTGGGTGTGAAGCCCAGATCCCAAG
Seq A exon
GTGTGGTCTTTGCATCTTACGGGCCTGAGTGGCGAGAGCAGAGGCGATTCTCTGTGTCCACCCTGCGCACCTTCGGCATGGGCAAGAAATCCCTGGAGGAGTGGGTGACCAAGGAGGCCGGCCACCTCTGTGATGCCTTCACTGCCCAGAATG
Seq C2 exon
GGCGGTCCATCAATCCCAAGGCCATGCTGAACAAAGCCTTGTGTAATGTGATCGCATCCCTCATTTTTGCCCGTCGCTTTGAATATGAAGACCCTTACCTCATCAGGATGCTGACACTAGTGGAAGAAAGTTTGATAGAAGTCTCTGGTTTCATTCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029128_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.4=100)
A:
PF0006717=p450=FE(11.1=100)
C2:
PF0006717=p450=FE(11.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGGAAGCCCATGGTCATT
R:
AGCATCCTGATGAGGTAAGGGT
Band lengths:
245-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]