RnoINT0044355 @ rn6
Intron Retention
Gene
ENSRNOG00000029128 | Cyp2d5
Description
cytochrome P450, family 2, subfamily d, polypeptide 5 [Source:RGD Symbol;Acc:628630]
Coordinates
chr7:123619224-123619792:-
Coord C1 exon
chr7:123619621-123619792
Coord A exon
chr7:123619377-123619620
Coord C2 exon
chr7:123619224-123619376
Length
244 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAA
5' ss Score
4.51
3' ss Seq
ACACACAGATGTGTTTGCAGGTG
3' ss Score
4.47
Exon sequences
Seq C1 exon
CTTCAACACCGCTATGGTGACGTGTTCAGCCTGCAGATGGGTTGGAAGCCCATGGTCATTGTCAACAGACTGAAAGCGGTGCAGGAAGTGCTGGTGACTCATGGAGAGGACACTGCTGACCGCCCTCCAGTGCCCATCTTTAAGTGCCTGGGTGTGAAGCCCAGATCCCAAG
Seq A exon
GTGAAAGGCCATGGGGAGGGTGGAGATCGTTTCAGAGATATGGCAAGGAGCAGAGGAAGCATGGGCATCAGTGTGGGTGGGAATGTGATACTCAAGGAAAAGTCACTGAAGCCCAGGACGACAGCCCAGAAGGCATGTGCTGGCCTGGGTCAGCTCATGGCCAGGACAGACCAGAGAAGAGAACTGGGGAGAGCAGGAGGCAGAGTAGCTCGGCATCCTTGGTCACACACAGATGTGTTTGCAG
Seq C2 exon
GTGTGGTCTTTGCATCTTACGGGCCTGAGTGGCGAGAGCAGAGGCGATTCTCTGTGTCCACCCTGCGCACCTTCGGCATGGGCAAGAAATCCCTGGAGGAGTGGGTGACCAAGGAGGCCGGCCACCTCTGTGATGCCTTCACTGCCCAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029128:ENSRNOT00000046024:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.4=100)
A:
NA
C2:
PF0006717=p450=FE(11.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATGGGTTGGAAGCCCATG
R:
CATTCTGGGCAGTGAAGGCAT
Band lengths:
292-536
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]