RnoINT0044438 @ rn6
Intron Retention
Gene
ENSRNOG00000051770 | Cyp2w1
Description
cytochrome P450, family 2, subfamily w, polypeptide 1 [Source:RGD Symbol;Acc:1305193]
Coordinates
chr12:17384491-17386087:-
Coord C1 exon
chr12:17385930-17386087
Coord A exon
chr12:17384665-17385929
Coord C2 exon
chr12:17384491-17384664
Length
1265 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
ACTGTCCCGCCCACTCGCAGTTA
3' ss Score
7.83
Exon sequences
Seq C1 exon
GCCAGCCCTTTCCTCTGACCCTGCTGGGTTGGGCACCGTGCAACATCACCTTCACACTCCTCTTCGGCCAGCGCTTTGACTACCAGGATCCTGTGTTTGTGTCCCTGTTGAGTCTCATTGACCAGGTCATGGTCCTGTTGGGCTCACCTGGCATACAG
Seq A exon
GTGAGAGGCTTGCCGCCTGGCAGGGAAAGGAGCTGAACTAGAGTGTGGGGCCCAGTTCTAAACCCTGAGGTCAGGGAGGTTGGTACGTAGCACTCTCCAAACAAAGAATGTGTGACATCAGCCAAAGGCAGACATTGGTTAGCGTGTTTTGTGCCTGAACCAGGTCCTGTGCTCTCTGGAGGTTGGGGCGTTTGGACCAAGGATAAATGGGCTTTTTTACACATCTCTAAGTGTGGCTGCTGAAACATGTGCAGGGGCCTTTACGGTTTGTGGGACCTGTGTCTGAGGGGTCCCCCACACAAATGTACCTTTTTCTTTTATTTATTTACTTTTGATAGAGGGTGTCTCTATGTGGCCCTGGCTGTCCTGGTATTGCCTATGTAGACCAGGCTGGCTTCAAACTCACAGATCCACTCGTCTTTGCCTCCTGAGTGCTGGAACTAAAGGTGTGTCCTGTCATGCCTGGCCAGGCACCTTCTTGACTCCTTGTCACAGAAATCGTGAAAATCAGCCTTTCTAGCGTCTAGGGCCCTAACATTTAAAGCGTCCTGGCTTTGGGCTAGACACTGGAGCCAGACACTCAGCACCAAGCCTTTACAGTTGAGTCCTGGCTCAGGATGAGGCCCCACAGGGGTGAGGAGGGGCAGCCATTGTGGTGAGCCTGTTCTTAGACTTGCCTTCACACCATGTAGTAGGAGCAGGCCATGAGCTCACTCCCAGAGCACTCACTGTGGGGGATGAAGGAGGCAGGGACCCCCTAGATGCCCTGGGTAATAGAGATGGTCCCCACCACTTAGAGCAACATGAGGCATTCCTCCCGGTTATTGCCAAAGCACTTGGAACTCTGAATACCTATTGGCACCAGACCCACTCTGTTGTAAGCCACACATTGCCGGTCCCCAATCATAGCTATGACTCCTTCTCCATCGAAGCCATTCCTCTTCTGATTTTCCCCTTCAGCGATAAGAGAAAGGAGCACGTCCTCAGGCAGCAAAGAGTACTTGGGTCTTGCCCAGAGCCATCCAAATGTATCAGGTCAGCTGGCTCCTTCCTGCACACTCTGAGATTTCCTCCCCGTCCCTGGACTTCCAGGAGGGTGACAAGCCTCTAGTGCTGCTGGCCTGGTGCCCTCTTGTGGTCAGGGGCAGCGTTGCCCTGATTCGTTTGTCCAGAGCCTGGAGCCAGCCTCACCTGCCTGACGGATGGATTGACTTCCTCCCAGTCACCTCACCTCGACCCCACCCCACTGTCCCGCCCACTCGCAG
Seq C2 exon
TTATTCAACACGTTCCCCCGGCTGGGGGCCTTACTGCGGTTGCACAGGCCAGTCTTGAGCAAGATCGAGGAGGTGCGCACCATCCTAAGAACCCTCCTGGAAGCGCAGAGACCACCCTTGCCAAACGGCAGTCCGGCGCGGAGTTATGTGGAAGCTCTGCTTCAGCAGGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051770:ENSRNOT00000091003:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.086
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.4=100)
A:
NA
C2:
PF0006717=p450=FE(12.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCCTTTCCTCTGACCCT
R:
AAGCAGAGCTTCCACATAACTCC
Band lengths:
318-1583
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]