GgaINT1000221 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9KYZ6]
Coordinates
chr23:4047927-4048246:-
Coord C1 exon
chr23:4048155-4048246
Coord A exon
chr23:4048085-4048154
Coord C2 exon
chr23:4047927-4048084
Length
70 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
CACTGTCCCCTCTCCAATAGGAT
3' ss Score
9.92
Exon sequences
Seq C1 exon
GTGCTGGAGCGGGACTGGCACACCACCTTCCTGCCCCAGTTCCAGGCATGCGTGCGTGCCGGGTCCTACAGCTTCATGTGCAGCTACAACAG
Seq A exon
GTACTGAGCATGGGGGGCGCAGAGGGGGGCGCGTGGCACTGCCCCATCTGCACTGTCCCCTCTCCAATAG
Seq C2 exon
GATCAACGGCGTCCCTGCCTGCGCCAACAAGAAGCTGCTGACGGACATCCTACGGGGCGAGTGGGGCTTCGAGGGCTATGTGGTGAGCGACGAGGGGGCTGTGGAGCTCATCCTGCTGGGGCACCGCTACACACACACCTTCCTGGAGACGGCCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001242:ENSGALT00000001886:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0093316=Glyco_hydro_3=FE(9.7=100)
A:
NA
C2:
PF0093316=Glyco_hydro_3=FE(17.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTCCTACAGCTTCATGTGC
R:
TCTCCAGGAAGGTGTGTGTGT
Band lengths:
181-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]