BtaINT0046224 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017701 | CYP2W1
Description
cytochrome P450, family 2, subfamily W, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:20243]
Coordinates
chr25:42307709-42309416:-
Coord C1 exon
chr25:42309259-42309416
Coord A exon
chr25:42307883-42309258
Coord C2 exon
chr25:42307709-42307882
Length
1376 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GCGGCCCTGCCCGCCCCCAGCTC
3' ss Score
6.47
Exon sequences
Seq C1 exon
GCCGGCCCTTCCCGCTGGCCCTGCTCCGCTGGGCTCCCTCCAACATCACCTTCACGCTCCTCTTCGGTCAGCGGTTCGACTACCGGGATCCTGTGTTCCTGTCCCTGCTGGGCCTCGTTGATGAGGTCATGGTCCTCCTGGGGAAGCCGAGTGTGCAG
Seq A exon
GTGAGAGGTCGATGTTCTGGCCTTGGGGGGGGGTGCAGGGAGCGAGGTGGCAGCAAGGAGAGGCTCCAAGCTTCACCGGCCACGTGACTCCAAGCCAGTGCCCTGCACTCCTGGAAACCAGGGGAGCCGAGGGCAGCGGTCCCCACCTGCCCACCGTCAAATCAGTAATAGACGCATTGCTCACCAGTGCGGGGGCGGGGGGGGGGGCAGCCCTGGGCGGTTCCTCTCGGAAATGGGGCTTGGTTCCCCCCAGTCCCTGAACCTCCTCCAGGGTCAGGAATCGTGAGGACCGGCTCTGATTTCCAAACCCCACGACTGCGTGCATTTCGTTTTTCCCCAGAACTTAAAAATAAAGCAAGTCGGTCGCACAGTGGTGTCCGACTCTGTGCGATCTCACGGACTGTAGCCCGCCTGGTCCTCTGTCCGTGGAATTCTCCAGGCAAGAATACTGGAGTGGGTGCCGTTCCCTTGTCCAGAGGATCTTCCTGACCCAGGGATAGAACCCGGGTCGCCTGCATTGCAGGCGGATTCCTCACCAACTGAGCCACTAACTTAAAGCGTTCCTAATTTGTAGGCACCATGACTGGTTTTAACTCTTAACTTGCTCGGGCACGCGTGCCCGGGTGGGGGCAGGGCACGTGTGTCTGGTGGCATGGGGCTCACGCGTACTTTCCAGCCCCATCTCTCCAGGACCTGAGGCCCTGGGCATGGGGTGGAGGCTGCTGGCTTCGGTCCTGATCCTAGTCACCCCCCGAGGCTGGCGGAACCTCAGACTCAGGAACATCGGACTTCCTGCCAAAAGTACCCTGGCCGAGTCCCACCAGGGGGCCCCAGCAGGCCCGAGGCTGGAGGGTCAGGGGCTCCAGGGAGACAGAATGTCCCGTGGCCTCCCATACCTGCACCCTGAGCGATGGCCAGGTCCCGGGGGACAGCGTGTGCAGAGGGCAGCTGACAACCGTGCCAGTCAGGCTGTGCTGTGACCCCCGGCTCACGGCGTCCTGAGCTGAAGCTTTAAGTTGGCAATTTCCCTTTTTTCCCCCCCCCGAATAACTCAGCGAAGTCAGTGACTTCCAAGGCAGCAGCCAGCCCTGCCTCCCTCTCCCCCTCTCTGGGGGGTGTGGAGGGGGGGTCATGGTGACAGCCGCCTGCTGTGACTTGCAAGGACCCCGGGTGTGTTACCTGTCAGTTGGCCCCTCCTCTGCGCACCCAGGTGGAGGCTTTCCTCCACGCCCAAGGGCTGCCGGTCCCACAGGGAGGGAGAGGGAGGGTGGCACCTCTGCCAGGAGCCTGGGGCGCTGCCGGTCCGCACAGGTGGCCTCACCTCCGGGCGGATGGCCCGCCCTCAGCCCTCACCACGCGGCCCTGCCCGCCCCCAG
Seq C2 exon
CTCTTCAACCTCTACCCGCGGCTCGGGGCCCTCCTCCAGCTGCACCGGCCGGTCCTGCGCAAGATCGAGGAGGTGCGGGCCATCCTGAGGGCCCTCCTGGAGGCGAGGCGGCACCGCACACCCCCGCGAGGGCCACAGCAGAGCTACCTGGACGCCCTGATCCAGCAGGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017701:ENSBTAT00000023544:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.155
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.4=100)
A:
NA
C2:
PF0006717=p450=FE(12.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGCTCCCTCCAACATCA
R:
CTGGCCCTGCTGGATCAG
Band lengths:
304-1680
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]