BtaEX0010599 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017701 | CYP2W1
Description
cytochrome P450, family 2, subfamily W, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:20243]
Coordinates
chr25:42307271-42309416:-
Coord C1 exon
chr25:42309259-42309416
Coord A exon
chr25:42307709-42307882
Coord C2 exon
chr25:42307271-42307409
Length
174 bp
Sequences
Splice sites
3' ss Seq
GCGGCCCTGCCCGCCCCCAGCTC
3' ss Score
6.47
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
Exon sequences
Seq C1 exon
GCCGGCCCTTCCCGCTGGCCCTGCTCCGCTGGGCTCCCTCCAACATCACCTTCACGCTCCTCTTCGGTCAGCGGTTCGACTACCGGGATCCTGTGTTCCTGTCCCTGCTGGGCCTCGTTGATGAGGTCATGGTCCTCCTGGGGAAGCCGAGTGTGCAG
Seq A exon
CTCTTCAACCTCTACCCGCGGCTCGGGGCCCTCCTCCAGCTGCACCGGCCGGTCCTGCGCAAGATCGAGGAGGTGCGGGCCATCCTGAGGGCCCTCCTGGAGGCGAGGCGGCACCGCACACCCCCGCGAGGGCCACAGCAGAGCTACCTGGACGCCCTGATCCAGCAGGGCCAG
Seq C2 exon
GAGAAAGACCCCGAGGGCCTGTTTACCGAGGCCAACGTGGTGGCCTGTGTCCTGGACATGGTCATGGCCGGCACGGAGACCACCGCCGCCACACTGCAGTGGGCCGCCCTCCTGATGGGCAAGCACCCGCGCGTGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017701-'6-6,'6-4,7-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.155 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.4=100)
A:
PF0006717=p450=FE(12.5=100)
C2:
PF0006717=p450=FE(10.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCCAACATCACCTTCACG
R:
GTGCTTGCCCATCAGGAGG
Band lengths:
249-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development