RnoEX6063664 @ rn6
Exon Skipping
Gene
ENSRNOG00000051770 | Cyp2w1
Description
cytochrome P450, family 2, subfamily w, polypeptide 1 [Source:RGD Symbol;Acc:1305193]
Coordinates
chr12:17384029-17386087:-
Coord C1 exon
chr12:17385930-17386087
Coord A exon
chr12:17384491-17384664
Coord C2 exon
chr12:17384029-17384167
Length
174 bp
Sequences
Splice sites
3' ss Seq
ACTGTCCCGCCCACTCGCAGTTA
3' ss Score
7.83
5' ss Seq
CAGGTCTTC
5' ss Score
0.53
Exon sequences
Seq C1 exon
GCCAGCCCTTTCCTCTGACCCTGCTGGGTTGGGCACCGTGCAACATCACCTTCACACTCCTCTTCGGCCAGCGCTTTGACTACCAGGATCCTGTGTTTGTGTCCCTGTTGAGTCTCATTGACCAGGTCATGGTCCTGTTGGGCTCACCTGGCATACAG
Seq A exon
TTATTCAACACGTTCCCCCGGCTGGGGGCCTTACTGCGGTTGCACAGGCCAGTCTTGAGCAAGATCGAGGAGGTGCGCACCATCCTAAGAACCCTCCTGGAAGCGCAGAGACCACCCTTGCCAAACGGCAGTCCGGCGCGGAGTTATGTGGAAGCTCTGCTTCAGCAGGGCCAG
Seq C2 exon
CAGGATGACCCGGAGGACATGTTTAGCGAGGCTAATGTTCTGGCCTGTACACTGGACATGGTCATGGCTGGAACAGAGACTACGGCAGCCACACTGCAGTGGGCAGTCTTCCTGATGGTTAAGCACCCACACGTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051770-'5-5,'5-4,6-5=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.086 C2=0.021
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.4=100)
A:
PF0006717=p450=FE(12.5=100)
C2:
PF0006717=p450=FE(10.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCTTTCCTCTGACCCTG
R:
CTGCCGTAGTCTCTGTTCCAG
Band lengths:
243-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]