GgaEX6012096 @ galGal3
Exon Skipping
Gene
ENSGALG00000003917 | F1P2F9_CHICK
Description
NA
Coordinates
chr14:2251249-2252713:+
Coord C1 exon
chr14:2251249-2251409
Coord A exon
chr14:2251914-2252087
Coord C2 exon
chr14:2252572-2252713
Length
174 bp
Sequences
Splice sites
3' ss Seq
AGGCTTCTGTTGCTCCACAGTTA
3' ss Score
7.6
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
GGAAACCATTTGACACGAAGATGATCCTCAACAATGCTGTATCCAACGTCATCTGCTCTATACTGTTCGGAGAGAGGTTTGAATATGATGATCCAGCATTTCTCACTTTGCTGAAGCTGTTAAATGAGAATACCAAGCTGCTGGGCTCACCAATGATGCTG
Seq A exon
TTATATAATTTCTACCCATCCCTTGGATTTCTCATTGGAGCTTCCAAGACCGTGCTACAAAATATCAGTGAGCTGAGTGCCTTCCTCCAGGAACTCTTCAAGGAGCACGAAGAAGAATTTAATGAGAATAACCTAACAGGCTTCGTTGATGCCTTCATGATGAAGCAACAACAG
Seq C2 exon
GAGTCAAAGAAACCCCACAGTATGTTCCACAATGAAAGCCTGCTGTTTTCAACCCTGGATCTCTTTGCTGCTGGGACTGAGACTACTTCCACAACCATGCGCTGGGGTCTCCTTCTGATGATGAAATACCCAGAAATTCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003917-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
PF0006717=p450=FE(12.4=100)
C2:
PF0006717=p450=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTATCCAACGTCATCTGC
R:
TCATCAGAAGGAGACCCCAGC
Band lengths:
248-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]