MmuEX0013363 @ mm10
Exon Skipping
Gene
ENSMUSG00000029541 | Cyp2w1
Description
cytochrome P450, family 2, subfamily w, polypeptide 1 [Source:MGI Symbol;Acc:MGI:3616076]
Coordinates
chr5:139354460-139356188:+
Coord C1 exon
chr5:139354460-139354617
Coord A exon
chr5:139355554-139355727
Coord C2 exon
chr5:139356050-139356188
Length
174 bp
Sequences
Splice sites
3' ss Seq
CCTGTCCTGCCCACACGCAGCTA
3' ss Score
6.85
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
Exon sequences
Seq C1 exon
GCCAGCCCCTCCCCCTGGCGCTGCTGGGTTGGGCACCCTGCAACATCACCTTCACACTTCTCTTCGGCCAGCGCTTTGACTACCAGGATCCTGTGTTTGTGTCCCTGCTGAGTCTCATTGACCAGGTCATGGTCCTGTTGGGGTCACCTGGCATACAG
Seq A exon
CTATTCAACACGTTCCCCCGGCTGGGGGCCTTCCTGCGGTTGCACAGGCCGGTCTTGAGCAAGATCGAGGAGGTGCGCACCATCCTGAGAACCCTGCTGGAAACGCGGAGACCACCCTTGCCAACGGGCGGTCCCGCGCAGAGTTATGTAGAAGCTCTGCTTCAGCAGGGCCAG
Seq C2 exon
GAAGATGACCCTGAGGACATGTTTGGCGAGGCCAATGTCCTGGCCTGTACACTGGACATGGTCATGGCTGGAACAGAGACCACGGCGGCCACGCTGCAGTGGGCCGTCTTCCTGATGGTTAAGCACCCACATGTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029541_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.233 C2=0.064
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.4=100)
A:
PF0006717=p450=FE(12.5=100)
C2:
PF0006717=p450=FE(10.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTGCAACATCACCTTCAC
R:
TAACCATCAGGAAGACGGCCC
Band lengths:
245-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types